epigen-UCSD / HiC_scripts Public

HiC processing scripts used in the center.

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Name		Name	Last commit message	Last commit date
Latest commit History 40 Commits
Tychele_2020		Tychele_2020
islet_2020		islet_2020
notebooks		notebooks
.gitignore		.gitignore
README.md		README.md
bedpe2multires.sh		bedpe2multires.sh
calcAPA.R		calcAPA.R
calcAPA.sh		calcAPA.sh
calcAPA_dist_bins.sh		calcAPA_dist_bins.sh
callAPA.pbs		callAPA.pbs
callAPA.sh		callAPA.sh
callArrowHead.sh		callArrowHead.sh
dumpKR.sh		dumpKR.sh
genHic.pbs		genHic.pbs
genHicSimple.pbs		genHicSimple.pbs
genHicSimple.sh		genHicSimple.sh
juicer.sh		juicer.sh
permAPA.sh		permAPA.sh
runHic2cool.pbs		runHic2cool.pbs
runHiccups.pbs		runHiccups.pbs
runHiccups.sh		runHiccups.sh
runHiccups_online.sh		runHiccups_online.sh
runJuicer.pbs		runJuicer.pbs
runJuicer.sh		runJuicer.sh
runMega.pbs		runMega.pbs
runMega.sh		runMega.sh
runQth.pbs		runQth.pbs