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update changelog
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jamesli124 committed Aug 11, 2024
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7 changes: 5 additions & 2 deletions CHANGELOG.md
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Expand Up @@ -7,9 +7,11 @@ The format is based on
and this project adheres to
[Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [Unrelease version]
## [Unreleased version]

### Changed
- include `chrom_sizes` file as required argument for
`finaletoolkit cleavage-profile`
- Numpy dependency version set to <2 to avoid breaking changes from numpy 2.0
- Replaced all instances of `np.NaN` with `np.nan`.

Expand All @@ -20,7 +22,8 @@ and this project adheres to
- Docstring
- `finaletoolkit.version` module containing single-source `__version__`
variable
- `remove_nocov` option in `finaletoolkit.frag.delfi` to toggle dropping two bins with low coverage. These bins are dropped in delfi_scripts but
- `remove_nocov` option in `finaletoolkit.frag.delfi` to toggle dropping two
bins with low coverage. These bins are dropped in delfi_scripts but
may not apply to fragment files not aligned to hg19.
- tests for `finaletoolkit.frag.delfi_merge_bins`

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