diff --git a/DESCRIPTION b/DESCRIPTION index 965e9c8..c6e678d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: margheRita Title: Mass spectrometry-based metabolomics data analysis -Version: 0.2.6 -Date: 2024-06-19 +Version: 0.2.7 +Date: 2024-06-28 Authors@R: c(person(given = "Ettore", family = "Mosca", role = c("aut", "cre"), email = "ettore.mosca@itb.cnr.it", comment = c(ORCID = "0000-0002-3102-5150")), person(given = "Zahrasadat", family = "Aalavikakhki", role = "aut", email = "zahrasadat.alavikakhki@studenti.unimi.it"), diff --git a/NEWS b/NEWS index 73a6098..c5068f3 100644 --- a/NEWS +++ b/NEWS @@ -1,4 +1,10 @@ -03 May 2025, v0.2.5 +28 June 2024, v0.2.7 +-- addition of citation and link to zenodo dataset + +19 June 2024, v0.2.6 +-- various minor improvements in code, function documentation and vignettes + +03 May 2024, v0.2.5 -- various minor improvements in code, function documentation and vignettes 29 March 2024, v0.2.3 diff --git a/README.md b/README.md index 3dcdfd7..8d0cb05 100644 --- a/README.md +++ b/README.md @@ -18,7 +18,7 @@ Documentation: https://emosca-cnr.github.io/margheRita Source code: https://github.com/emosca-cnr/margheRita -Citation: ... +Citation: Ettore Mosca, Marynka Ulaszewska, Zahrasadat Alavikakhki, Edoardo Niccolò Bellini, Valeria Mannella, Gianfranco Frigerio, Denise Drago, Annapaola Andolfo. MargheRita: an R package for LC-MS/MS SWATH metabolomics data analysis and confident metabolite identification based on a spectral library of reference standards. bioRxiv 2024.06.20.599545; doi: https://doi.org/10.1101/2024.06.20.599545 Contacts: @@ -27,17 +27,5 @@ Contacts: # Installation -The package requires a series of other R packages, which are availble in [CRAN](https://cran.r-project.org/), [Bioconductor](https://www.bioconductor.org/) and [github](https://github.com/). In most of the cases, the following instructions guarantee that all such dependencies are installed: - -```{r, eval=FALSE} -install.packages("devtools") -devtools::install_github(c("pcastellanoescuder/POMA", "antonvsdata/notame")) - -if (!require("BiocManager", quietly = TRUE)){ - install.packages("BiocManager") -} -BiocManager::install(c("clusterProfiler", "pcaMethods")) - -devtools::install_github("emosca-cnr/margheRita", dependencies = T) -``` +See documentation at https://emosca-cnr.github.io/margheRita diff --git a/docs/404.html b/docs/404.html index 69fed3c..d415d0c 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ margheRita - 0.2.6 + 0.2.7 diff --git a/docs/articles/index.html b/docs/articles/index.html index 3003e26..5d71db3 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ margheRita - 0.2.6 + 0.2.7 diff --git a/docs/articles/margheRita.html b/docs/articles/margheRita.html index d28daa4..c78c4aa 100644 --- a/docs/articles/margheRita.html +++ b/docs/articles/margheRita.html @@ -33,7 +33,7 @@ margheRita - 0.2.6 + 0.2.7 @@ -105,6 +105,13 @@

Introductionhttps://github.com/emosca-cnr/margheRita

+

Citation: Ettore Mosca, Marynka Ulaszewska, Zahrasadat Alavikakhki, +Edoardo Niccolò Bellini, Valeria Mannella, Gianfranco Frigerio, Denise +Drago, Annapaola Andolfo. MargheRita: an R package for LC-MS/MS SWATH +metabolomics data analysis and confident metabolite identification based +on a spectral library of reference standards. bioRxiv 2024.06.20.599545; +doi: https://doi.org/10.1101/2024.06.20.599545

Contacts:

Documentation: https://emosca-cnr.github.io/margheRita

Source code: https://github.com/emosca-cnr/margheRita

-

Citation: …

+

Citation: Ettore Mosca, Marynka Ulaszewska, Zahrasadat Alavikakhki, Edoardo Niccolò Bellini, Valeria Mannella, Gianfranco Frigerio, Denise Drago, Annapaola Andolfo. MargheRita: an R package for LC-MS/MS SWATH metabolomics data analysis and confident metabolite identification based on a spectral library of reference standards. bioRxiv 2024.06.20.599545; doi: https://doi.org/10.1101/2024.06.20.599545

Contacts: