W3id iris

.github/workflows/cd_publish.yml

@@ -12,6 +12,10 @@ on:
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
+# Grant action the permissions it needs
+permissions:
+  contents: write
+
 jobs:
   build:
     runs-on: ubuntu-latest
@@ -35,26 +39,31 @@ jobs:
       - name: Copy json-ld context
         run: cp -r context build/.
 
-      - name: Generate squashed ontology
-        run: ontoconvert -saw
-          -c 'http://www.w3.org/2004/02/skos/core#prefLabel-->http://www.w3.org/2000/01/rdf-schema#label'
-          -c 'elucidation-->http://www.w3.org/2000/01/rdf-schema#comment'
-          -c 'definition-->http://www.w3.org/2000/01/rdf-schema#comment'
-          oteio.ttl build/oteio.ttl
-          #-c 'comment-->http://www.w3.org/2000/01/rdf-schema#comment'
-
-      - name: Generate inferred ontology
-        run: ontoconvert -saw --reasoner=HermiT
-          -c 'http://www.w3.org/2004/02/skos/core#prefLabel-->http://www.w3.org/2000/01/rdf-schema#label'
-          -c 'elucidation-->http://www.w3.org/2000/01/rdf-schema#comment'
-          -c 'definition-->http://www.w3.org/2000/01/rdf-schema#comment'
-          oteio.ttl build/oteio-inferred.ttl
-          #-c 'comment-->http://www.w3.org/2000/01/rdf-schema#comment'
+      #- name: Generate squashed ontology
+      #  run: ontoconvert -saw
+      #    -c 'http://www.w3.org/2004/02/skos/core#prefLabel-->http://www.w3.org/2000/01/rdf-schema#label'
+      #    -c 'elucidation-->http://www.w3.org/2000/01/rdf-schema#comment'
+      #    -c 'definition-->http://www.w3.org/2000/01/rdf-schema#comment'
+      #    oteio.ttl build/oteio.ttl
+      #    #-c 'comment-->http://www.w3.org/2000/01/rdf-schema#comment'
+
+      #- name: Generate inferred ontology
+      #  run: ontoconvert -saw --reasoner=HermiT
+      #    -c 'http://www.w3.org/2004/02/skos/core#prefLabel-->http://www.w3.org/2000/01/rdf-schema#label'
+      #    -c 'elucidation-->http://www.w3.org/2000/01/rdf-schema#comment'
+      #    -c 'definition-->http://www.w3.org/2000/01/rdf-schema#comment'
+      #    oteio.ttl build/oteio-inferred.ttl
+      #    #-c 'comment-->http://www.w3.org/2000/01/rdf-schema#comment'
 
       - name: Generate documentation
-        run: pylode -i build/oteio-inferred.ttl -o build/oteio.html -p ontdoc
+        #run: pylode -i build/oteio-inferred.ttl -o build/oteio.html -p ontdoc
+        run: |
+          pylode -i pipeline.ttl -o build/oteio.html -p ontdoc
 
       - name: Deploy
         uses: JamesIves/github-pages-deploy-action@v4
         with:
           folder: build  # The folder the action should deploy.
+          branch: gh-pages
+          git-config-name: "OTEIO CD_publish Github Action"
+          git-config-email: team40@sintef.no

catalog-v001.xml

@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
   <group id="Folder Repository, directory=, recursive=true, Auto-Update=false, version=2" prefer="public" xml:base="">
-    <uri name="http://emmo.info/oteio/0.3.0"                uri="./oteio.ttl"/>
-    <uri name="http://emmo.info/oteio/0.3.0/pipeline"       uri="./pipeline.ttl"/>
-    <uri name="http://emmo.info/oteio/0.3.0/oteapi"         uri="./oteapi.ttl"/>
+    <uri name="https://w3id.org/emmo/domain/oteio/0.4.0"                uri="./oteio.ttl"/>
+    <uri name="https://w3id.org/emmo/domain/oteio/0.4.0/pipeline"       uri="./pipeline.ttl"/>
+    <uri name="https://w3id.org/emmo/domain/oteio/0.4.0/oteapi"         uri="./oteapi.ttl"/>
   </group>
 </catalog>

context/context.json

@@ -1,41 +1,42 @@
 {
-  "@version": 1.1,
+  "@context": {
+    "@version": 1.1,
 
-  "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
-  "dcterms": "http://purl.org/dc/terms/",
-  "dcat": "http://www.w3.org/ns/dcat#",
-  "oteio": "https://w3id.org/emmo/domain/oteio#",
+    "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
+    "dcterms": "http://purl.org/dc/terms/",
+    "dcat": "http://www.w3.org/ns/dcat#",
+    "oteio": "https://w3id.org/emmo/domain/oteio#",
 
-  "resources": "@nest",
-  "configuration": {
-    "@id": "oteio:configuration",
-    "@type": "@json"
-  },
+    "resources": "@nest",
+    "configuration": {
+      "@id": "oteio:configuration",
+      "@type": "@json"
+    },
 
-  "dataresource": {
-    "@id": "oteio:dataresource",
-    "@type": "oteio:DataResource",
-    "@nest": "resources"
-  },
-  "downloadURL": "dcat:downloadURL",
-  "mediaType": "dcat:mediaType",
-  "license": "dcterms:license",
+    "dataresource": {
+      "@id": "oteio:dataresource",
+      "@type": "oteio:DataResource",
+      "@nest": "resources"
+    },
+    "downloadURL": "dcat:downloadURL",
+    "mediaType": "dcat:mediaType",
+    "license": "dcterms:license",
 
-  "parse": {
-    "@id": "oteio:parse",
-    "@type": "oteio:Parse",
-    "@nest": "resources"
-  },
-  "parserType": "oteio:parserType",
-  "datamodel": "oteio:datamodel",
-
-  "mapping": {
-    "@id": "oteio:mapping",
-    "@type": "oteio:Mapping",
-    "@nest": "resources"
-  },
-  "mappingType": "oteio:mappingType",
-  "prefixes": "oteio:prefixes",
-  "triples": "oteio:triples",
+    "parse": {
+      "@id": "oteio:parse",
+      "@type": "oteio:Parse",
+      "@nest": "resources"
+    },
+    "parserType": "oteio:parserType",
+    "datamodel": "oteio:datamodel",
 
+    "mapping": {
+      "@id": "oteio:mapping",
+      "@type": "oteio:Mapping",
+      "@nest": "resources"
+    },
+    "mappingType": "oteio:mappingType",
+    "prefixes": "oteio:prefixes",
+    "triples": "oteio:triples"
+  }
 }