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fix: Add datasets in CodeRAG-Bench #1595

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merged 20 commits into from
Feb 1, 2025

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hepengfe
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@hepengfe hepengfe commented Dec 15, 2024

This PR address #1151
It has a blocker as the dataset cannot be downloaded as reported here code-rag-bench/code-rag-bench#5

Update on 1/3/2025: the dataset server has recovered.

Checklist

  • Run tests locally to make sure nothing is broken using make test.
  • Run the formatter to format the code using make lint.

Adding datasets checklist

Reason for dataset addition: ...

  • I have run the following models on the task (adding the results to the pr). These can be run using the mteb -m {model_name} -t {task_name} command.
    • sentence-transformers/paraphrase-multilingual-MiniLM-L12-v2
    • intfloat/multilingual-e5-small
  • I have checked that the performance is neither trivial (both models gain close to perfect scores) nor random (both models gain close to random scores).
  • If the dataset is too big (e.g. >2048 examples), considering using self.stratified_subsampling() under dataset_transform()
  • I have filled out the metadata object in the dataset file (find documentation on it here).
  • Run tests locally to make sure nothing is broken using make test.
  • Run the formatter to format the code using make lint.

@hepengfe hepengfe changed the title add three out of four datasets in CodeRAG-Bench add datasets in CodeRAG-Bench Dec 15, 2024
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hepengfe commented Jan 6, 2025

@KennethEnevoldsen @isaac-chung Hi, can I get the approval for the workflow.

@hepengfe hepengfe marked this pull request as ready for review January 6, 2025 07:22
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Thanks! Good first try. Added a few suggestions. And since the dataset_transform and split_by_first_newline are mostly repeated, let's put these classes in the same file. That way the functions can be written once and reused.

mteb/abstasks/AbsTaskRetrieval.py Outdated Show resolved Hide resolved
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hepengfe commented Jan 7, 2025

Thanks! Good first try. Added a few suggestions. And since the dataset_transform and split_by_first_newline are mostly repeated, let's put these classes in the same file. That way the functions can be written once and reused.

I noticed that mteb/tasks/Retrieval/code/CodeSearchNetCCRetrieval.py and mteb/tasks/Retrieval/code/COIRCodeSearchNetRetrieval.py have the same function _load_code_search_code_retrieval. Plus, any suggestion on where to write those helper functions? Do I just create a new file such as mteb/task_helper_function.py and write functions there?

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I noticed that mteb/tasks/Retrieval/code/CodeSearchNetCCRetrieval.py and mteb/tasks/Retrieval/code/COIRCodeSearchNetRetrieval.py have the same function _load_code_search_code_retrieval. Plus, any suggestion on where to write those helper functions? Do I just create a new file such as mteb/task_helper_function.py and write functions there?

That can be one option. I'd prefer to limit this PR to CodeRAG-bench and avoid any refactoring other files.

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hepengfe commented Jan 9, 2025

I also noticed that the evaluation score for nauc_ndcg_at_*_std is negative. Is it expected? If not, any pointer on the solution for the error?

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isaac-chung commented Jan 14, 2025

I also noticed that the evaluation score for nauc_ndcg_at_*_std is negative. Is it expected? If not, any pointer on the solution for the error?

I've not paid attention to that before. Maybe @Samoed or @orionw might? Could be related to these being reranking tasks?

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Samoed commented Jan 14, 2025

This is common on many tasks. E.g. voyage results on MIRACL

@isaac-chung isaac-chung changed the title add datasets in CodeRAG-Bench dix: Add datasets in CodeRAG-Bench Jan 15, 2025
@isaac-chung isaac-chung changed the title dix: Add datasets in CodeRAG-Bench fix: Add datasets in CodeRAG-Bench Jan 15, 2025
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Nice. I see two main items from docs before we merge:

  1. Add dataset metrics: "Add metadata to the task (run task.calculate_metadata_metrics())"
  2. Add a benchmark entry in https://github.com/embeddings-benchmark/mteb/blob/main/mteb/benchmarks/benchmarks.py to reference these datasets.

That will complete the PR. Let us know if you have any questions. Thanks again for iterating!

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hepengfe commented Jan 25, 2025

Any way to run task.calculate_metadata_metrics() in a low-memory setting? I am trying it out but stackoverflow-posts is too large (2.65GB) and it results in OOM even for 128 GB RAM. @Samoed @isaac-chung

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isaac-chung commented Jan 25, 2025

@hepengfe hmm I don't have a good suggestion. In light of that, I'd say adding a benchmark entry (more important) and whatever dataset metrics you already have should complete the PR. That way we can look at the descriptive stats issue separately.

@hepengfe hepengfe requested a review from isaac-chung January 26, 2025 08:12
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Samoed commented Jan 26, 2025

Can you submit results of a model on this benchmark to results repository?

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@hepengfe thanks for your contributions! This PR is good to go.

@isaac-chung isaac-chung merged commit 9c762da into embeddings-benchmark:main Feb 1, 2025
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@isaac-chung isaac-chung mentioned this pull request Feb 1, 2025
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Samoed commented Feb 2, 2025

I've looked on stackoverflow-posts and it has 9x6gb jsonl files. I can't image how long this would take to run

@Samoed Samoed mentioned this pull request Feb 2, 2025
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isaac-chung added a commit that referenced this pull request Feb 3, 2025
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* 1.31.4
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* fix: Limited plotly version to be less than 6.0.0 (#1902)
Limited plotly version to be less than 6.0.0
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* 1.31.5
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* Update tasks table
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* Feat: Add FaMTEB (Farsi/Persian Text Embedding Benchmark) (#1843)
* Add Summary Retrieval Task
* Add FaMTEBClassification
* Add FaMTEBClustering
* Add FaMTEBPairClassification
* Add FaMTEBRetrieval and BEIRFA and FaMTEBSTS
* Add FaMTEBSummaryRetrieval
* Add FaMTEB to benchmarks
* fix benchmark names
* temporary fix metadata
* Fix dataset revisions
* Update SummaryRetrievalEvaluator.py
* Update task files
* Update task files
* add data domain and subtask description
* Update AbsTaskSummaryRetrieval and FaMTEBSummaryRetrieval
* Update AbsTaskSummaryRetrieval
* Add mock task
* Update AbsTaskSummaryRetrieval
* Update AbsTaskSummaryRetrieval
* make lint
* Refactor SummaryRetrieval to subclass BitextMining
* Add aggregated datasets
---------
Co-authored-by: mehran <mehan.sarmadi16@gmail.com>
Co-authored-by: e.zeinivand <zeinivand@ymail.com>
Co-authored-by: Erfun76 <59398902+Erfun76@users.noreply.github.com>
* Update tasks table
* Docs: update docs according to current state (#1870)
* update docs
* Apply suggestions from code review
Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>
* update readme
* Update README.md
Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>
---------
Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>
* Update tasks table
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* Adding a banner to the new MMTEB leaderboard (#1908)
* Adding a banner to the new MMTEB leaderboard
* linting
* Update mteb/leaderboard/app.py
Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>
* adding reference to mteb arena
---------
Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>
* Update tasks table
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* fix: Filling missing metadata for leaderboard release (#1895)
* Update ArxivClusteringS2S.py
* fill some metadat for retrieval
* fill in the reste of missing metadata
* fix metadata
* fix climatefever metadata
* fix: Added CQADupstack annotations
* removed annotation for non-exisitant task
* format
* Added financial to other financial dataset
* Moved ArguAna annotation to derivate datasets
---------
Co-authored-by: Kenneth Enevoldsen <kennethcenevoldsen@gmail.com>
* Update tasks table
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* 1.31.6
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* docs: Add sort to domains for task metadata (#1922)
Tests currently go into an infinite loop. This should prevent that.
* Update tasks table
* 1.31.7
Automatically generated by python-semantic-release
* docs: Updated citation for mteb(scandinavian) (#1914)
fix: Updated citation for mteb(scandinavian)
* fix: Add datasets in CodeRAG-Bench (#1595)
* add three out of four datasets in CodeRAG-Bench
* add verified CodeRAGStackoverflowPostsRetrieval dataset
* clean up code and make some comments
* fixed lint errors
* addressed comments about code-rag datasets: fixed grammar and remove unnessary code and loop
* roll back files which is not supposed to change
* fixed the comments in split_by_first_newline() and make the methods private by adding a underscore prefix
* refactor to use common args
* update task descriptions
* add entry in benchmarks
* correct the alphanumeric order for the dataset
* add  in tasks.md
* add  in tasks.md
* update task metadata
* update importing path
* fix lint errors
* correct CodeRAG task metadata description field and id for stackoverflow-posts
* fix error in test
---------
Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>
* Update tasks table
* 1.31.8
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* Leaderboard: Acks (#1930)
Add acs
* omit instructions.py
---------
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Samoed added a commit that referenced this pull request Feb 4, 2025
* Update tasks table

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* update stella/jasper metainfo (#1896)

update stella meta

* Update tasks table

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* 1.31.5

Automatically generated by python-semantic-release

* Update tasks table

* Update tasks table

* Update tasks table

* Update tasks table

* Feat: Add FaMTEB (Farsi/Persian Text Embedding Benchmark) (#1843)

* Add Summary Retrieval Task

* Add FaMTEBClassification

* Add FaMTEBClustering

* Add FaMTEBPairClassification

* Add FaMTEBRetrieval and BEIRFA and FaMTEBSTS

* Add FaMTEBSummaryRetrieval

* Add FaMTEB to benchmarks

* fix benchmark names

* temporary fix metadata

* Fix dataset revisions

* Update SummaryRetrievalEvaluator.py

* Update task files

* Update task files

* add data domain and subtask description

* Update AbsTaskSummaryRetrieval and FaMTEBSummaryRetrieval

* Update AbsTaskSummaryRetrieval

* Add mock task

* Update AbsTaskSummaryRetrieval

* Update AbsTaskSummaryRetrieval

* make lint

* Refactor SummaryRetrieval to subclass BitextMining

* Add aggregated datasets

---------

Co-authored-by: mehran <mehan.sarmadi16@gmail.com>
Co-authored-by: e.zeinivand <zeinivand@ymail.com>
Co-authored-by: Erfun76 <59398902+Erfun76@users.noreply.github.com>

* Update tasks table

* Docs: update docs according to current state (#1870)

* update docs

* Apply suggestions from code review

Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>

* update readme

* Update README.md

Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>

---------

Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>

* Update tasks table

* Update tasks table

* Update tasks table

* Adding a banner to the new MMTEB leaderboard (#1908)

* Adding a banner to the new MMTEB leaderboard

* linting

* Update mteb/leaderboard/app.py

Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>

* adding reference to mteb arena

---------

Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>

* Update tasks table

* Update tasks table

* Update tasks table

* Update tasks table

* Update tasks table

* fix: Filling missing metadata for leaderboard release (#1895)

* Update ArxivClusteringS2S.py

* fill some metadat for retrieval

* fill in the reste of missing metadata

* fix metadata

* fix climatefever metadata

* fix: Added CQADupstack annotations

* removed annotation for non-exisitant task

* format

* Added financial to other financial dataset

* Moved ArguAna annotation to derivate datasets

---------

Co-authored-by: Kenneth Enevoldsen <kennethcenevoldsen@gmail.com>

* Update tasks table

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* docs: Add sort to domains for task metadata (#1922)

Tests currently go into an infinite loop. This should prevent that.

* Update tasks table

* 1.31.7

Automatically generated by python-semantic-release

* docs: Updated citation for mteb(scandinavian) (#1914)

fix: Updated citation for mteb(scandinavian)

* fix: Add datasets in CodeRAG-Bench (#1595)

* add three out of four datasets in CodeRAG-Bench
* add verified CodeRAGStackoverflowPostsRetrieval dataset
* clean up code and make some comments
* fixed lint errors
* addressed comments about code-rag datasets: fixed grammar and remove unnessary code and loop
* roll back files which is not supposed to change
* fixed the comments in split_by_first_newline() and make the methods private by adding a underscore prefix
* refactor to use common args
* update task descriptions
* add entry in benchmarks
* correct the alphanumeric order for the dataset
* add  in tasks.md
* add  in tasks.md
* update task metadata
* update importing path
* fix lint errors
* correct CodeRAG task metadata description field and id for stackoverflow-posts
* fix error in test
---------
Co-authored-by: Isaac Chung <chungisaac1217@gmail.com>

* Update tasks table

* 1.31.8

Automatically generated by python-semantic-release

* update __init__

* update generate_imports script for aggregational tasks

* add descriptive stats

* remove print from script generate_imports

* add rest of metadata

* fix tests

* add todo for test

* Revert "fix tests"

This reverts commit 7e8be03.

* add back check for multilingual

* fix imports

---------

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Co-authored-by: Pengfei He <hepengfe@gmail.com>
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