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fixation_many_sites

fixation at arbitrarily many unlinked sites in a diploid population evolving according to random sweepstakes, randomly occurring bottlenecks, and viability selection

Use cweave to extract the documentation from a .w file; and ctangle to extract the C/C++ code

The accompanying manuscript for unlinked sites is available at https://www.biorxiv.org/content/10.1101/2022.09.19.508488v1

and for linked sites here https://www.preprints.org/manuscript/202212.0263/v1

Example of an excursion to fixation at two linked sites

An example of an excursion to fixation at two linked sites in a diploid population evolving according to random sweepstakes and recurrent bottlenecks when the fit type is recessive at both sites (no epistasis)

excursionexample