DESCRIPTION

Package: scCustFx
Type: Package
Title: single-cell custom fxs Package
Version: 0.1.0
Author: Eisa Mahyari
Maintainer: The package maintainer <mahyarie@ohsu.edu>
Description: The goal of this package is bringing together tools and pipelines for the analysis of single-cell and spatial omics data to complement other packages like Seurat and OOSAP.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 4.2.0)
Imports:
    data.table,
    dplyr,
    tidyr,
    naturalsort,
    Matrix,
    ggplot2,
    cowplot,
    knitr,
    RColorBrewer,
    stringr,
    tidyr,
Suggests:
    Seurat,
    SeuratDisk,
    Rlabkey,
    monocle,
    org.Hs.eg.db,
    org.Mm.eg.db,
    HSMMSingleCell,
    DelayedMatrixStats,
    DESeq2,
    genefilter,
    ggvis,
    DropletUtils,
    SingleR,
    MAST,
    scDblFinder,
    ExperimentHub,
    ComplexHeatmap,
    celldex,
    clusterProfiler,
    ggrastr,
    rmdformats,
    igraph,
    ggfortify,
    circlize,
    Hmisc,
    ggbeeswarm,
    wesanderson,
    testthat (>= 2.1.0)
Remotes:
    mojaveazure/seurat-disk,
    VPetukhov/ggrastr,
    juba/rmdformats,
    karthik/wesanderson
RoxygenNote: 7.3.2