diff --git a/manual-est/images.log b/manual-est/images.log index 988e656..0176e44 100644 --- a/manual-est/images.log +++ b/manual-est/images.log @@ -1,4 +1,4 @@ -This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2024.3.15) 13 JUN 2024 09:14 +This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2024.3.15) 8 JAN 2025 12:38 entering extended mode restricted \write18 enabled. %&-line parsing enabled. diff --git a/manual-est/images.pdf b/manual-est/images.pdf index 75c01e4..9e8de09 100644 Binary files a/manual-est/images.pdf and b/manual-est/images.pdf differ diff --git a/manual-est/images.tex b/manual-est/images.tex index 071b556..c7506c5 100644 --- a/manual-est/images.tex +++ b/manual-est/images.tex @@ -118,20 +118,20 @@ \else\expandafter\vss\fi}% \providecommand{\selectlanguage}[1]{}% \makeatletter \tracingstats = 1 -\providecommand{\Kappa}{\textrm{K}} -\providecommand{\Eta}{\textrm{H}} -\providecommand{\Zeta}{\textrm{Z}} -\providecommand{\Nu}{\textrm{N}} -\providecommand{\Omicron}{\textrm{O}} -\providecommand{\Chi}{\textrm{X}} +\providecommand{\Beta}{\textrm{B}} +\providecommand{\Alpha}{\textrm{A}} \providecommand{\Rho}{\textrm{R}} -\providecommand{\Iota}{\textrm{J}} \providecommand{\Mu}{\textrm{M}} -\providecommand{\omicron}{\textrm{o}} -\providecommand{\Alpha}{\textrm{A}} +\providecommand{\Zeta}{\textrm{Z}} +\providecommand{\Chi}{\textrm{X}} \providecommand{\Epsilon}{\textrm{E}} -\providecommand{\Beta}{\textrm{B}} +\providecommand{\Omicron}{\textrm{O}} +\providecommand{\Kappa}{\textrm{K}} +\providecommand{\Nu}{\textrm{N}} +\providecommand{\Iota}{\textrm{J}} \providecommand{\Tau}{\textrm{T}} +\providecommand{\omicron}{\textrm{o}} +\providecommand{\Eta}{\textrm{H}} \begin{document} diff --git a/manual-est/index.html b/manual-est/index.html index 2ba3ef9..cbd92ee 100644 --- a/manual-est/index.html +++ b/manual-est/index.html @@ -351,7 +351,7 @@

can be easily downloaded from the NCBI FTP site. -The packed binaries are blastp and makeblastdb from version ncbi-blast-2.14.0+. If these do +The packed binaries are blastp and makeblastdb from version ncbi-blast-2.16.0+. If these do not work in your machine or your prefer to use older BLAST versions, then it will be necessary to edit file lib/phyTools.pm. First, environmental variable $ENV{'BLAST_PATH'} needs to be set to the right path in your system (inside subroutine sub set_phyTools_env). @@ -2821,7 +2821,7 @@

The command line arguments were:
latex2html manual-est -no_antialias_text -split 0 -dir manual-est -no_navigation -show_section_numbers

-The translation was initiated on 2024-06-13 +The translation was initiated on 2025-01-08


diff --git a/manual-est/manual-est.html b/manual-est/manual-est.html index 2ba3ef9..cbd92ee 100644 --- a/manual-est/manual-est.html +++ b/manual-est/manual-est.html @@ -351,7 +351,7 @@

can be easily downloaded from the NCBI FTP site. -The packed binaries are blastp and makeblastdb from version ncbi-blast-2.14.0+. If these do +The packed binaries are blastp and makeblastdb from version ncbi-blast-2.16.0+. If these do not work in your machine or your prefer to use older BLAST versions, then it will be necessary to edit file lib/phyTools.pm. First, environmental variable $ENV{'BLAST_PATH'} needs to be set to the right path in your system (inside subroutine sub set_phyTools_env). @@ -2821,7 +2821,7 @@

The command line arguments were:
latex2html manual-est -no_antialias_text -split 0 -dir manual-est -no_navigation -show_section_numbers

-The translation was initiated on 2024-06-13 +The translation was initiated on 2025-01-08


diff --git a/manual/images.log b/manual/images.log index a9d3dd7..0e32b89 100644 --- a/manual/images.log +++ b/manual/images.log @@ -1,4 +1,4 @@ -This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2024.3.15) 13 JUN 2024 09:14 +This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2024.3.15) 8 JAN 2025 12:37 entering extended mode restricted \write18 enabled. %&-line parsing enabled. diff --git a/manual/images.pdf b/manual/images.pdf index 7cb2b5a..bbdb272 100644 Binary files a/manual/images.pdf and b/manual/images.pdf differ diff --git a/manual/images.tex b/manual/images.tex index e388ab3..5c2806a 100644 --- a/manual/images.tex +++ b/manual/images.tex @@ -118,20 +118,20 @@ \else\expandafter\vss\fi}% \providecommand{\selectlanguage}[1]{}% \makeatletter \tracingstats = 1 -\providecommand{\Eta}{\textrm{H}} +\providecommand{\Chi}{\textrm{X}} +\providecommand{\Rho}{\textrm{R}} +\providecommand{\Omicron}{\textrm{O}} \providecommand{\Tau}{\textrm{T}} -\providecommand{\Beta}{\textrm{B}} \providecommand{\Alpha}{\textrm{A}} -\providecommand{\Zeta}{\textrm{Z}} \providecommand{\omicron}{\textrm{o}} -\providecommand{\Iota}{\textrm{J}} -\providecommand{\Omicron}{\textrm{O}} -\providecommand{\Rho}{\textrm{R}} -\providecommand{\Mu}{\textrm{M}} +\providecommand{\Eta}{\textrm{H}} \providecommand{\Nu}{\textrm{N}} -\providecommand{\Chi}{\textrm{X}} \providecommand{\Kappa}{\textrm{K}} \providecommand{\Epsilon}{\textrm{E}} +\providecommand{\Mu}{\textrm{M}} +\providecommand{\Iota}{\textrm{J}} +\providecommand{\Beta}{\textrm{B}} +\providecommand{\Zeta}{\textrm{Z}} \begin{document} diff --git a/manual/index.html b/manual/index.html index b89a8e2..526f427 100644 --- a/manual/index.html +++ b/manual/index.html @@ -348,7 +348,7 @@

can be easily downloaded from the NCBI FTP site. -The packed binaries are blastp and makeblastdb from version ncbi-blast-2.14.0+. If these do +The packed binaries are blastp and makeblastdb from version ncbi-blast-2.16.0+. If these do not work in your machine or your prefer to use older BLAST versions, then it will be necessary to edit file lib/phyTools.pm. First, environmental variable $ENV{'BLAST_PATH'} needs to be set to the right path in your system (inside subroutine sub set_phyTools_env). @@ -4171,7 +4171,7 @@

The command line arguments were:
latex2html manual -no_antialias_text -split 0 -dir manual -no_navigation -show_section_numbers

-The translation was initiated on 2024-06-13 +The translation was initiated on 2025-01-08


diff --git a/manual/manual.html b/manual/manual.html index b89a8e2..526f427 100644 --- a/manual/manual.html +++ b/manual/manual.html @@ -348,7 +348,7 @@

can be easily downloaded from the NCBI FTP site. -The packed binaries are blastp and makeblastdb from version ncbi-blast-2.14.0+. If these do +The packed binaries are blastp and makeblastdb from version ncbi-blast-2.16.0+. If these do not work in your machine or your prefer to use older BLAST versions, then it will be necessary to edit file lib/phyTools.pm. First, environmental variable $ENV{'BLAST_PATH'} needs to be set to the right path in your system (inside subroutine sub set_phyTools_env). @@ -4171,7 +4171,7 @@

The command line arguments were:
latex2html manual -no_antialias_text -split 0 -dir manual -no_navigation -show_section_numbers

-The translation was initiated on 2024-06-13 +The translation was initiated on 2025-01-08