Updated Pfam URLs and HOWTOTettelin

eead-csic-compbio · Jun 13, 2024 · 4f7cf06 · 4f7cf06
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diff --git a/manual-est/images.log b/manual-est/images.log
@@ -1,4 +1,4 @@
-This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2022.6.15)  15 MAY 2023 14:55
+This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2024.3.15)  13 JUN 2024 09:14
 entering extended mode
  restricted \write18 enabled.
  %&-line parsing enabled.

diff --git a/manual-est/images.pdf b/manual-est/images.pdf
diff --git a/manual-est/images.tex b/manual-est/images.tex
@@ -118,20 +118,20 @@
   \else\expandafter\vss\fi}%
 \providecommand{\selectlanguage}[1]{}%
 \makeatletter \tracingstats = 1 
+\providecommand{\Kappa}{\textrm{K}}
+\providecommand{\Eta}{\textrm{H}}
 \providecommand{\Zeta}{\textrm{Z}}
-\providecommand{\Epsilon}{\textrm{E}}
-\providecommand{\Tau}{\textrm{T}}
+\providecommand{\Nu}{\textrm{N}}
+\providecommand{\Omicron}{\textrm{O}}
+\providecommand{\Chi}{\textrm{X}}
+\providecommand{\Rho}{\textrm{R}}
 \providecommand{\Iota}{\textrm{J}}
 \providecommand{\Mu}{\textrm{M}}
 \providecommand{\omicron}{\textrm{o}}
 \providecommand{\Alpha}{\textrm{A}}
-\providecommand{\Nu}{\textrm{N}}
-\providecommand{\Rho}{\textrm{R}}
-\providecommand{\Eta}{\textrm{H}}
-\providecommand{\Kappa}{\textrm{K}}
-\providecommand{\Chi}{\textrm{X}}
-\providecommand{\Omicron}{\textrm{O}}
+\providecommand{\Epsilon}{\textrm{E}}
 \providecommand{\Beta}{\textrm{B}}
+\providecommand{\Tau}{\textrm{T}}
 
 
 \begin{document}

diff --git a/manual-est/index.html b/manual-est/index.html
diff --git a/manual-est/manual-est.html b/manual-est/manual-est.html
diff --git a/manual/images.log b/manual/images.log
@@ -1,4 +1,4 @@
-This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2022.6.15)  15 MAY 2023 14:54
+This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2024.3.15)  13 JUN 2024 09:14
 entering extended mode
  restricted \write18 enabled.
  %&-line parsing enabled.

diff --git a/manual/images.pdf b/manual/images.pdf
diff --git a/manual/images.tex b/manual/images.tex
@@ -118,20 +118,20 @@
   \else\expandafter\vss\fi}%
 \providecommand{\selectlanguage}[1]{}%
 \makeatletter \tracingstats = 1 
-\providecommand{\Chi}{\textrm{X}}
-\providecommand{\Nu}{\textrm{N}}
-\providecommand{\Alpha}{\textrm{A}}
-\providecommand{\Rho}{\textrm{R}}
+\providecommand{\Eta}{\textrm{H}}
 \providecommand{\Tau}{\textrm{T}}
-\providecommand{\Iota}{\textrm{J}}
 \providecommand{\Beta}{\textrm{B}}
-\providecommand{\Eta}{\textrm{H}}
-\providecommand{\Omicron}{\textrm{O}}
+\providecommand{\Alpha}{\textrm{A}}
+\providecommand{\Zeta}{\textrm{Z}}
 \providecommand{\omicron}{\textrm{o}}
-\providecommand{\Kappa}{\textrm{K}}
+\providecommand{\Iota}{\textrm{J}}
+\providecommand{\Omicron}{\textrm{O}}
+\providecommand{\Rho}{\textrm{R}}
 \providecommand{\Mu}{\textrm{M}}
+\providecommand{\Nu}{\textrm{N}}
+\providecommand{\Chi}{\textrm{X}}
+\providecommand{\Kappa}{\textrm{K}}
 \providecommand{\Epsilon}{\textrm{E}}
-\providecommand{\Zeta}{\textrm{Z}}
 
 
 \begin{document}

diff --git a/manual/index.html b/manual/index.html
diff --git a/manual/manual.html b/manual/manual.html
diff --git a/tutorial/pangenome_tutorial.html b/tutorial/pangenome_tutorial.html