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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 246 repositories
  • eggd_001_Reference Public
    eastgenomics/eggd_001_Reference’s past year of commit activity
    Perl 1 1 9 (1 issue needs help) 2 Updated Mar 17, 2025
  • eggd_vep_CENCNV_config Public

    Json configuration file for CEN CNV annotation using VEP.

    eastgenomics/eggd_vep_CENCNV_config’s past year of commit activity
    0 MIT 0 1 0 Updated Mar 17, 2025
  • uranus_nf_core_mini Public

    A mini uranus mostly nf-core pipeline that incorporates mosdepth, cggpindel (not nf-core) and sentieon bwamem

    eastgenomics/uranus_nf_core_mini’s past year of commit activity
    Nextflow 0 0 0 0 Updated Mar 17, 2025
  • eggd_automatic_deletion Public

    automated deletion of NGS .tar files on DNAnexus

    eastgenomics/eggd_automatic_deletion’s past year of commit activity
    0 0 0 1 Updated Mar 17, 2025
  • mnemosyne Public

    displays variants

    eastgenomics/mnemosyne’s past year of commit activity
    0 MIT 0 0 0 Updated Mar 17, 2025
  • egg5_dias_CEN_config Public
    eastgenomics/egg5_dias_CEN_config’s past year of commit activity
    2 MIT 0 1 0 Updated Mar 17, 2025
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 3 0 Updated Mar 17, 2025
  • eggd_arriba Public
    eastgenomics/eggd_arriba’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 17, 2025
  • eggd_generate_wgs_solid_cancer_workbook Public
    eastgenomics/eggd_generate_wgs_solid_cancer_workbook’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Mar 17, 2025
  • RD_requests Public
    eastgenomics/RD_requests’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 17, 2025
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