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poetry.lock
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# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand.
[[package]]
name = "altair"
version = "5.5.0"
description = "Vega-Altair: A declarative statistical visualization library for Python."
optional = false
python-versions = ">=3.9"
files = [
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jinja2 = "*"
jsonschema = ">=3.0"
narwhals = ">=1.14.2"
packaging = "*"
typing-extensions = {version = ">=4.10.0", markers = "python_version < \"3.14\""}
[package.extras]
all = ["altair-tiles (>=0.3.0)", "anywidget (>=0.9.0)", "numpy", "pandas (>=1.1.3)", "pyarrow (>=11)", "vega-datasets (>=0.9.0)", "vegafusion[embed] (>=1.6.6)", "vl-convert-python (>=1.7.0)"]
dev = ["duckdb (>=1.0)", "geopandas", "hatch (>=1.13.0)", "ipython[kernel]", "mistune", "mypy", "pandas (>=1.1.3)", "pandas-stubs", "polars (>=0.20.3)", "pyarrow-stubs", "pytest", "pytest-cov", "pytest-xdist[psutil] (>=3.5,<4.0)", "ruff (>=0.6.0)", "types-jsonschema", "types-setuptools"]
doc = ["docutils", "jinja2", "myst-parser", "numpydoc", "pillow (>=9,<10)", "pydata-sphinx-theme (>=0.14.1)", "scipy", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinxext-altair"]
save = ["vl-convert-python (>=1.7.0)"]
[[package]]
name = "annotated-types"
version = "0.7.0"
description = "Reusable constraint types to use with typing.Annotated"
optional = false
python-versions = ">=3.8"
files = [
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]
[[package]]
name = "anyio"
version = "4.7.0"
description = "High level compatibility layer for multiple asynchronous event loop implementations"
optional = false
python-versions = ">=3.9"
files = [
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idna = ">=2.8"
sniffio = ">=1.1"
typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""}
[package.extras]
doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx_rtd_theme"]
test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21)"]
trio = ["trio (>=0.26.1)"]
[[package]]
name = "attrs"
version = "24.3.0"
description = "Classes Without Boilerplate"
optional = false
python-versions = ">=3.8"
files = [
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]
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benchmark = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
cov = ["cloudpickle", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
dev = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"]
[[package]]
name = "biopython"
version = "1.84"
description = "Freely available tools for computational molecular biology."
optional = false
python-versions = ">=3.9"
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numpy = "*"
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name = "blinker"
version = "1.9.0"
description = "Fast, simple object-to-object and broadcast signaling"
optional = false
python-versions = ">=3.9"
files = [
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name = "cachetools"
version = "5.5.0"
description = "Extensible memoizing collections and decorators"
optional = false
python-versions = ">=3.7"
files = [
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[[package]]
name = "certifi"
version = "2024.12.14"
description = "Python package for providing Mozilla's CA Bundle."
optional = false
python-versions = ">=3.6"
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version = "3.4.1"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
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python-versions = ">=3.7"
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aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)", "google-auth (>=1.22.0,<2.0dev)"]
requests = ["requests (>=2.18.0,<3.0.0dev)"]
[[package]]
name = "googleapis-common-protos"
version = "1.66.0"
description = "Common protobufs used in Google APIs"
optional = false
python-versions = ">=3.7"
files = [
{file = "googleapis_common_protos-1.66.0-py2.py3-none-any.whl", hash = "sha256:d7abcd75fabb2e0ec9f74466401f6c119a0b498e27370e9be4c94cb7e382b8ed"},
{file = "googleapis_common_protos-1.66.0.tar.gz", hash = "sha256:c3e7b33d15fdca5374cc0a7346dd92ffa847425cc4ea941d970f13680052ec8c"},
]
[package.dependencies]
grpcio = {version = ">=1.44.0,<2.0.0.dev0", optional = true, markers = "extra == \"grpc\""}
protobuf = ">=3.20.2,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<6.0.0.dev0"
[package.extras]
grpc = ["grpcio (>=1.44.0,<2.0.0.dev0)"]
[[package]]
name = "grpc-google-iam-v1"
version = "0.14.0"
description = "IAM API client library"
optional = false
python-versions = ">=3.7"
files = [
{file = "grpc_google_iam_v1-0.14.0-py2.py3-none-any.whl", hash = "sha256:fb4a084b30099ba3ab07d61d620a0d4429570b13ff53bd37bac75235f98b7da4"},
{file = "grpc_google_iam_v1-0.14.0.tar.gz", hash = "sha256:c66e07aa642e39bb37950f9e7f491f70dad150ac9801263b42b2814307c2df99"},
]
[package.dependencies]
googleapis-common-protos = {version = ">=1.56.0,<2.0.0dev", extras = ["grpc"]}