Installing conda on mac for neural network exercises

[Mathildekrafft2001]

> library(reticulate)
> use_miniconda("MLBA", required = TRUE)
Warning: Previous request to `use_python("/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/bin/python3.10", required = TRUE)` will be ignored. It is superseded by request to `use_python("/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/bin/python")
> py_config()
python:         /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/bin/python
libpython:      /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/libpython3.10.dylib
pythonhome:     /Users/mathildekrafft/Library/r-miniconda/envs/MLBA:/Users/mathildekrafft/Library/r-miniconda/envs/MLBA
version:        3.10.16 | packaged by conda-forge | (main, Dec  5 2024, 14:12:04) [Clang 18.1.8 ]
numpy:          /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/numpy
numpy_version:  1.26.4

NOTE: Python version was forced by use_python() function
> keras::install_keras(method = "conda", envname = "MLBA")
2025-03-17 10:37:23.158644: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
+ . /Users/mathildekrafft/Library/r-miniconda/bin/activate
+ conda activate 'MLBA'
+ '/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/bin/python' -m pip install --upgrade --no-user 'tensorflow==2.15.*' tensorflow-hub tensorflow-datasets scipy requests Pillow h5py pandas pydot
Collecting tensorflow==2.15.*
  Using cached tensorflow-2.15.1-cp310-cp310-macosx_10_15_x86_64.whl.metadata (4.0 kB)
Collecting tensorflow-hub
  Using cached tensorflow_hub-0.16.1-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting tensorflow-datasets
  Using cached tensorflow_datasets-4.9.8-py3-none-any.whl.metadata (11 kB)
Requirement already satisfied: scipy in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (1.15.2)
Requirement already satisfied: requests in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (2.32.3)
Requirement already satisfied: Pillow in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (11.1.0)
Requirement already satisfied: h5py in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (3.13.0)
Requirement already satisfied: pandas in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (2.2.3)
Collecting pydot
  Using cached pydot-3.0.4-py3-none-any.whl.metadata (10 kB)
Requirement already satisfied: absl-py>=1.0.0 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (2.1.0)
Requirement already satisfied: astunparse>=1.6.0 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (1.6.3)
Requirement already satisfied: flatbuffers>=23.5.26 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (25.2.10)
Requirement already satisfied: gast!=0.5.0,!=0.5.1,!=0.5.2,>=0.2.1 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (0.6.0)
Requirement already satisfied: google-pasta>=0.1.1 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (0.2.0)
Requirement already satisfied: libclang>=13.0.0 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (18.1.1)
Requirement already satisfied: ml-dtypes~=0.3.1 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (0.3.2)
Requirement already satisfied: numpy<2.0.0,>=1.23.5 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (1.26.4)
Requirement already satisfied: opt-einsum>=2.3.2 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (3.4.0)
Requirement already satisfied: packaging in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (24.2)
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Requirement already satisfied: setuptools in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (75.8.2)
Requirement already satisfied: six>=1.12.0 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (1.17.0)
Requirement already satisfied: termcolor>=1.1.0 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (2.5.0)
Requirement already satisfied: typing-extensions>=3.6.6 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (4.12.2)
Collecting wrapt<1.15,>=1.11.0 (from tensorflow==2.15.*)
  Using cached wrapt-1.14.1-cp310-cp310-macosx_10_9_x86_64.whl.metadata (6.7 kB)
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Requirement already satisfied: grpcio<2.0,>=1.24.3 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow==2.15.*) (1.71.0)
Collecting tensorboard<2.16,>=2.15 (from tensorflow==2.15.*)
  Using cached tensorboard-2.15.2-py3-none-any.whl.metadata (1.7 kB)
Collecting tensorflow-estimator<2.16,>=2.15.0 (from tensorflow==2.15.*)
  Using cached tensorflow_estimator-2.15.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting keras<2.16,>=2.15.0 (from tensorflow==2.15.*)
  Using cached keras-2.15.0-py3-none-any.whl.metadata (2.4 kB)
Collecting tf-keras>=2.14.1 (from tensorflow-hub)
  Using cached tf_keras-2.19.0-py3-none-any.whl.metadata (1.8 kB)
Collecting dm-tree (from tensorflow-datasets)
  Using cached dm_tree-0.1.9.tar.gz (35 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting etils>=1.6.0 (from etils[edc,enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
  Using cached etils-1.12.2-py3-none-any.whl.metadata (6.5 kB)
Collecting immutabledict (from tensorflow-datasets)
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Collecting promise (from tensorflow-datasets)
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Requirement already satisfied: psutil in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow-datasets) (7.0.0)
Collecting pyarrow (from tensorflow-datasets)
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Collecting simple_parsing (from tensorflow-datasets)
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Collecting tensorflow-metadata (from tensorflow-datasets)
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Collecting toml (from tensorflow-datasets)
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Requirement already satisfied: tqdm in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorflow-datasets) (4.67.1)
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Collecting einops (from etils[edc,enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
  Using cached einops-0.8.1-py3-none-any.whl.metadata (13 kB)
Collecting fsspec (from etils[edc,enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
  Using cached fsspec-2025.3.0-py3-none-any.whl.metadata (11 kB)
Collecting importlib_resources (from etils[edc,enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
  Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
Collecting zipp (from etils[edc,enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
  Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
Collecting google-auth<3,>=1.6.3 (from tensorboard<2.16,>=2.15->tensorflow==2.15.*)
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Collecting google-auth-oauthlib<2,>=0.5 (from tensorboard<2.16,>=2.15->tensorflow==2.15.*)
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Requirement already satisfied: markdown>=2.6.8 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorboard<2.16,>=2.15->tensorflow==2.15.*) (3.7)
Requirement already satisfied: tensorboard-data-server<0.8.0,>=0.7.0 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorboard<2.16,>=2.15->tensorflow==2.15.*) (0.7.2)
Requirement already satisfied: werkzeug>=1.0.1 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from tensorboard<2.16,>=2.15->tensorflow==2.15.*) (3.1.3)
INFO: pip is looking at multiple versions of tf-keras to determine which version is compatible with other requirements. This could take a while.
Collecting tf-keras>=2.14.1 (from tensorflow-hub)
  Using cached tf_keras-2.18.0-py3-none-any.whl.metadata (1.6 kB)
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Requirement already satisfied: attrs>=18.2.0 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from dm-tree->tensorflow-datasets) (25.3.0)
Collecting docstring-parser<1.0,>=0.15 (from simple_parsing->tensorflow-datasets)
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Collecting protobuf!=4.21.0,!=4.21.1,!=4.21.2,!=4.21.3,!=4.21.4,!=4.21.5,<5.0.0dev,>=3.20.3 (from tensorflow==2.15.*)
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Collecting cachetools<6.0,>=2.0.0 (from google-auth<3,>=1.6.3->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
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Collecting pyasn1-modules>=0.2.1 (from google-auth<3,>=1.6.3->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
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Collecting rsa<5,>=3.1.4 (from google-auth<3,>=1.6.3->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
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Collecting requests-oauthlib>=0.7.0 (from google-auth-oauthlib<2,>=0.5->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
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Requirement already satisfied: MarkupSafe>=2.1.1 in /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages (from werkzeug>=1.0.1->tensorboard<2.16,>=2.15->tensorflow==2.15.*) (3.0.2)
Collecting pyasn1<0.7.0,>=0.4.6 (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
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Collecting oauthlib>=3.0.0 (from requests-oauthlib>=0.7.0->google-auth-oauthlib<2,>=0.5->tensorboard<2.16,>=2.15->tensorflow==2.15.*)
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Building wheels for collected packages: dm-tree
  Building wheel for dm-tree (setup.py): started
  Building wheel for dm-tree (setup.py): finished with status 'error'
  error: subprocess-exited-with-error
  
  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> [108 lines of output]
      /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
        warnings.warn(msg)
      running bdist_wheel
      running build
      running build_py
      creating build/lib.macosx-10.13-x86_64-cpython-310/tree
      copying tree/sequence.py -> build/lib.macosx-10.13-x86_64-cpython-310/tree
      copying tree/__init__.py -> build/lib.macosx-10.13-x86_64-cpython-310/tree
      copying tree/tree_test.py -> build/lib.macosx-10.13-x86_64-cpython-310/tree
      copying tree/tree_benchmark.py -> build/lib.macosx-10.13-x86_64-cpython-310/tree
      running build_ext
      cmake version 3.31.6
      
      CMake suite maintained and supported by Kitware (kitware.com/cmake).
      Found CMake
      -- The CXX compiler identification is AppleClang 16.0.0.16000026
      -- Detecting CXX compiler ABI info
      -- Detecting CXX compiler ABI info - done
      -- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++ - skipped
      -- Detecting CXX compile features
      -- Detecting CXX compile features - done
      -- Found Python3: /Users/mathildekrafft/Library/r-miniconda/envs/MLBA/bin/python (found version "3.10.16") found components: Interpreter Development Development.Module Development.Embed
      Current build type is: Release
      PROJECT_BINARY_DIR is: /private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/build/temp.macosx-10.13-x86_64-cpython-310
      CMake Deprecation Warning at /private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/build/temp.macosx-10.13-x86_64-cpython-310/_deps/absl-src/CMakeLists.txt:22 (cmake_minimum_required):
        Compatibility with CMake < 3.10 will be removed from a future version of
        CMake.
      
        Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
        to tell CMake that the project requires at least <min> but has been updated
        to work with policies introduced by <max> or earlier.
      
      
      CMake Warning at /private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/build/temp.macosx-10.13-x86_64-cpython-310/_deps/absl-src/CMakeLists.txt:70 (message):
        A future Abseil release will default ABSL_PROPAGATE_CXX_STD to ON for CMake
        3.8 and up.  We recommend enabling this option to ensure your project still
        builds correctly.
      
      
      -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
      -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
      -- Found Threads: TRUE
      CMake Deprecation Warning at /private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/build/temp.macosx-10.13-x86_64-cpython-310/_deps/pybind11-src/CMakeLists.txt:8 (cmake_minimum_required):
        Compatibility with CMake < 3.10 will be removed from a future version of
        CMake.
      
        Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
        to tell CMake that the project requires at least <min> but has been updated
        to work with policies introduced by <max> or earlier.
      
      
      -- pybind11 v2.10.1
      -- Performing Test HAS_FLTO
      -- Performing Test HAS_FLTO - Success
      -- Performing Test HAS_FLTO_THIN
      -- Performing Test HAS_FLTO_THIN - Success
      -- Configuring done (6.9s)
      -- Generating done (0.9s)
      -- Build files have been written to: /private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/build/temp.macosx-10.13-x86_64-cpython-310
      [  0%] Building CXX object _deps/absl-build/absl/base/CMakeFiles/absl_log_severity.dir/log_severity.cc.o
      In file included from /private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/build/temp.macosx-10.13-x86_64-cpython-310/_deps/absl-src/absl/base/log_severity.cc:15:
      /private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/build/temp.macosx-10.13-x86_64-cpython-310/_deps/absl-src/absl/base/log_severity.h:18:10: fatal error: 'array' file not found
         18 | #include <array>
            |          ^~~~~~~
      1 error generated.
      make[2]: *** [_deps/absl-build/absl/base/CMakeFiles/absl_log_severity.dir/log_severity.cc.o] Error 1
      make[1]: *** [_deps/absl-build/absl/base/CMakeFiles/absl_log_severity.dir/all] Error 2
      make: *** [all] Error 2
      Traceback (most recent call last):
        File "<string>", line 2, in <module>
        File "<pip-setuptools-caller>", line 34, in <module>
        File "/private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/setup.py", line 119, in <module>
          setuptools.setup(
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/__init__.py", line 117, in setup
          return distutils.core.setup(**attrs)
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 186, in setup
          return run_commands(dist)
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 202, in run_commands
          dist.run_commands()
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 983, in run_commands
          self.run_command(cmd)
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/dist.py", line 999, in run_command
          super().run_command(command)
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 1002, in run_command
          cmd_obj.run()
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/command/bdist_wheel.py", line 369, in run
          self.run_command("build")
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 339, in run_command
          self.distribution.run_command(command)
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/dist.py", line 999, in run_command
          super().run_command(command)
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 1002, in run_command
          cmd_obj.run()
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 136, in run
          self.run_command(cmd_name)
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 339, in run_command
          self.distribution.run_command(command)
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/dist.py", line 999, in run_command
          super().run_command(command)
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 1002, in run_command
          cmd_obj.run()
        File "/private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/setup.py", line 64, in run
          self.build_extension(ext)
        File "/private/var/folders/sh/79yks6zx4rgbcm8z234mxstm0000gn/T/pip-install-q24jljyz/dm-tree_72ed02eb21e84707a85c9b1f4a3b104f/setup.py", line 105, in build_extension
          subprocess.check_call([
        File "/Users/mathildekrafft/Library/r-miniconda/envs/MLBA/lib/python3.10/subprocess.py", line 369, in check_call
          raise CalledProcessError(retcode, cmd)
      subprocess.CalledProcessError: Command '['cmake', '--build', 'build/temp.macosx-10.13-x86_64-cpython-310', '--config', 'Release']' returned non-zero exit status 2.
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for dm-tree
  Running setup.py clean for dm-tree
Failed to build dm-tree
ERROR: Failed to build installable wheels for some pyproject.toml based projects (dm-tree)
Error: Error installing package(s): "'tensorflow==2.15.*'", "tensorflow-hub", "tensorflow-datasets", "scipy", "requests", "Pillow", "h5py", "pandas", "pydot"
> sessionInfo()
R version 4.4.1 (2024-06-14)
Platform: x86_64-apple-darwin20
Running under: macOS Sonoma 14.7.4

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Europe/Zurich
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
[1] reticulate_1.41.0.1

loaded via a namespace (and not attached):
 [1] R6_2.6.1          base64enc_0.1-3   xfun_0.51        
 [4] Matrix_1.7-0      lattice_0.22-6    magrittr_2.0.3   
 [7] rpart_4.1.23      keras_2.15.0      knitr_1.49       
[10] generics_0.1.3    png_0.1-8         lifecycle_1.0.4  
[13] cli_3.6.4         tensorflow_2.16.0 grid_4.4.1       
[16] zeallot_0.1.0     renv_1.1.2        withr_3.0.2      
[19] tfruns_1.5.3      compiler_4.4.1    rstudioapi_0.17.1
[22] tools_4.4.1       whisker_0.4.1     evaluate_1.0.3   
[25] Rcpp_1.0.14       yaml_2.3.10       rlang_1.1.5      
[28] jsonlite_1.9.1