diff --git a/Gemfile.lock b/Gemfile.lock index d719aa9..ab0750b 100644 --- a/Gemfile.lock +++ b/Gemfile.lock @@ -9,12 +9,11 @@ GEM eventmachine (>= 0.12.9) http_parser.rb (~> 0) eventmachine (1.2.7) + eventmachine (1.2.7-x64-mingw32) ffi (1.15.5) - ffi (1.15.5-x64-mingw-ucrt) forwardable-extended (2.6.0) gemoji (3.0.1) - google-protobuf (3.22.0-arm64-darwin) - google-protobuf (3.22.0-x64-mingw-ucrt) + google-protobuf (3.22.0) http_parser.rb (0.8.0) i18n (1.12.0) concurrent-ruby (~> 1.0) @@ -61,28 +60,42 @@ GEM rb-fsevent (~> 0.10, >= 0.10.3) rb-inotify (~> 0.9, >= 0.9.10) mercenary (0.4.0) - mini_portile2 (2.8.1) - nokogiri (1.13.10) - mini_portile2 (~> 2.8.0) - racc (~> 1.4) - nokogiri (1.13.10-arm64-darwin) + mini_portile2 (2.8.5) + nokogiri (1.15.4) + mini_portile2 (~> 2.8.2) racc (~> 1.4) pathutil (0.16.2) forwardable-extended (~> 2.6) posix-spawn (0.3.15) public_suffix (5.0.1) - racc (1.6.2) + racc (1.7.3) rainbow (3.1.1) + rake (13.1.0) rb-fsevent (0.11.2) rb-inotify (0.10.1) ffi (~> 1.0) rexml (3.2.5) rouge (3.30.0) safe_yaml (1.0.5) + sass-embedded (1.58.3) + google-protobuf (~> 3.21) + rake (>= 10.0.0) + sass-embedded (1.58.3-aarch64-linux-gnu) + google-protobuf (~> 3.21) + sass-embedded (1.58.3-arm-linux-gnueabihf) + google-protobuf (~> 3.21) sass-embedded (1.58.3-arm64-darwin) google-protobuf (~> 3.21) sass-embedded (1.58.3-x64-mingw-ucrt) google-protobuf (~> 3.21) + sass-embedded (1.58.3-x64-mingw32) + google-protobuf (~> 3.21) + sass-embedded (1.58.3-x86-linux-gnu) + google-protobuf (~> 3.21) + sass-embedded (1.58.3-x86_64-darwin) + google-protobuf (~> 3.21) + sass-embedded (1.58.3-x86_64-linux-gnu) + google-protobuf (~> 3.21) terminal-table (3.0.2) unicode-display_width (>= 1.1.1, < 3) unicode-display_width (2.4.2) diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index b839434..66d8e52 100644 Binary files a/_cite/.cache/cache.db and b/_cite/.cache/cache.db differ diff --git a/_data/citations.yaml b/_data/citations.yaml index 84f7277..cd238b2 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -2210,6 +2210,154 @@ orcid: 0000-0003-1147-3666 plugin: orcid.py file: orcid.yaml +- title: Doublecortin domain containing protein 2 (DCDC2) genetic variants in primary + sclerosing cholangitis + authors: + - Angela C. Cheung + - Brian D. Juran + - Raymond M. Moore + - Nicholas F. LaRusso + - Konstantinos N. Lazaridis + publisher: Journal of Hepatology + date: '2017-09-01' + link: https://doi.org/gs3bbx + id: doi:10.1016/j.jhep.2017.02.036 + orcid: 0000-0003-4196-1804 + plugin: orcid.py + file: orcid.yaml +- title: Label-Free Proteomic Analysis of Protein Changes in the Striatum during Chronic + Ethanol Use and Early Withdrawal + authors: + - Jennifer R. Ayers-Ringler + - Alfredo Oliveros + - Yanyan Qiu + - Daniel M. Lindberg + - David J. Hinton + - Raymond M. Moore + - Surendra Dasari + - Doo-Sup Choi + publisher: Frontiers in Behavioral Neuroscience + date: '2016-03-11' + link: https://doi.org/gs3bbz + id: doi:10.3389/fnbeh.2016.00046 + orcid: 0000-0003-4196-1804 + plugin: orcid.py + file: orcid.yaml +- title: Prevalence of Pathogenic Mutations in Cancer Predisposition Genes among Pancreatic + Cancer Patients + authors: + - Chunling Hu + - Steven N. Hart + - William R. Bamlet + - Raymond M. Moore + - Kannabiran Nandakumar + - Bruce W. Eckloff + - Yean K. Lee + - Gloria M. Petersen + - Robert R. McWilliams + - Fergus J. Couch + publisher: Cancer Epidemiology, Biomarkers & Prevention + date: '2016-01-01' + link: https://doi.org/gs3bb2 + id: doi:10.1158/1055-9965.EPI-15-0455 + orcid: 0000-0003-4196-1804 + plugin: orcid.py + file: orcid.yaml +- id: ':' + title: Accurate clinical detection of hemoglobin variants via combined top-down + and bottom-up proteomics + publisher: ASMS 63th Conference Proceedings + date: '2016-06-09' + link: http://www.asms.org/publications/abstracts-and-proceedings + orcid: 0000-0003-4196-1804 + plugin: orcid.py + file: orcid.yaml +- id: eid:2-s2.0-84938820322 + title: Bioinformatics strategies for identifying regions of epigenetic deregulation + associated with aberrant transcript splicing and RNA-editing + publisher: BIOINFORMATICS 2015 - 6th International Conference on Bioinformatics + Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference + on Biomedical Engineering Systems and Technologies, BIOSTEC 2015 + date: '2022-05-24' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84938820322&partnerID=MN8TOARS + orcid: 0000-0003-4196-1804 + plugin: orcid.py + file: orcid.yaml +- title: 'PANDA: pathway and annotation explorer for visualizing and interpreting + gene-centric data' + authors: + - Steven N. Hart + - Raymond M. Moore + - Michael T. Zimmermann + - Gavin R. Oliver + - Jan B. Egan + - Alan H. Bryce + - Jean-Pierre A. Kocher + publisher: PeerJ + date: '2015-05-19' + link: https://doi.org/gs3bb3 + id: doi:10.7717/peerj.970 + orcid: 0000-0003-4196-1804 + plugin: orcid.py + file: orcid.yaml +- title: 'HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq + data' + authors: + - Huihuang Yan + - Jared Evans + - Mike Kalmbach + - Raymond Moore + - Sumit Middha + - Stanislav Luban + - Liguo Wang + - Aditya Bhagwate + - Ying Li + - Zhifu Sun + - Xianfeng Chen + - Jean-Pierre A Kocher + publisher: BMC Bioinformatics + date: '2014-08-15' + link: https://doi.org/f6rmzn + id: doi:10.1186/1471-2105-15-280 + orcid: 0000-0003-4196-1804 + plugin: orcid.py + file: orcid.yaml +- title: 'The Biological Reference Repository (BioR): a rapid and flexible system + for genomics annotation' + authors: + - Jean-Pierre A. Kocher + - Daniel J. Quest + - Patrick Duffy + - Michael A. Meiners + - Raymond M. Moore + - David Rider + - Asif Hossain + - Steven N. Hart + - Valentin Dinu + publisher: Bioinformatics + date: '2014-03-10' + link: https://doi.org/f59rz4 + id: doi:10.1093/bioinformatics/btu137 + orcid: 0000-0003-4196-1804 + plugin: orcid.py + file: orcid.yaml +- title: 'SoftSearch: Integration of Multiple Sequence Features to Identify Breakpoints + of Structural Variations' + authors: + - Steven N. Hart + - Vivekananda Sarangi + - Raymond Moore + - Saurabh Baheti + - Jaysheel D. Bhavsar + - Fergus J. Couch + - Jean-Pierre A. Kocher + publisher: PLoS ONE + date: '2013-12-16' + link: https://doi.org/gnhp39 + id: doi:10.1371/journal.pone.0083356 + orcid: 0000-0003-4196-1804 + plugin: orcid.py + file: orcid.yaml - title: Computational tumor stroma reaction evaluation led to novel prognosis-associated fibrosis and molecular signature discoveries in high-grade serous ovarian carcinoma authors: