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README-shadow.txt
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#cooler locations, some expected at these locations
# CTCF degron
/data/alv/CTCF_degron/data/CkoCT442-NT-pool.mcool
/data/alv/CTCF_degron/data/CkoCT442-IAA-pool.mcool
#polII degron
/data/alv/polII_degron/data/20200417_remap_polIIdegron/coolers_library_group/PTB2539-NT.hg19.mapq_30.1000.mcool
/data/alv/polII_degron/data/20200417_remap_polIIdegron/coolers_library_group/PTB2539-IAA.hg19.mapq_30.1000.mcool
#AAVS1 clone
/data/alv/CTCF_degron/data/DDX55-TAF5L-ctrl-pool/CkoCT442-AAVS1-NT-pool.mcool
/data/alv/CTCF_degron/data/DDX55-TAF5L-ctrl-pool/CkoCT442-AAVS1-IAA-pool.mcool
#DDX55 clones
/data/alv/CTCF_degron/data/DDX55-TAF5L-ctrl-pool/DDX55-clones-NT.hg19.mapq_30.1000.mcool
/data/alv/CTCF_degron/data/DDX55-TAF5L-ctrl-pool/DDX55-clones-IAA.hg19.mapq_30.1000.mcool
#TAF5L clones
/data/alv/CTCF_degron/data/DDX55-TAF5L-ctrl-pool/TAF5L-clones-NT.hg19.mapq_30.1000.mcool
/data/alv/CTCF_degron/data/DDX55-TAF5L-ctrl-pool/TAF5L-clones-IAA.hg19.mapq_30.1000.mcool
#siCONTROL
/data/alv/CTCF_degron/data/siCTRL-NT.hg19.mapq_30.1000.mcool
/data/alv/CTCF_degron/data/siCTRL-IAA.hg19.mapq_30.1000.mcool
#siDDX55
/data/alv/CTCF_degron/data/siDDX55-NT.hg19.mapq_30.1000.mcool
/data/alv/CTCF_degron/data/siDDX55-IAA.hg19.mapq_30.1000.mcool
#siTAF5L
/data/alv/CTCF_degron/data/siTAF5L-NT.hg19.mapq_30.1000.mcool
/data/alv/CTCF_degron/data/siTAF5L-IAA.hg19.mapq_30.1000.mcool
#RAD21 degron
/data/alv/CTCF_degron/data/RAD21-AID-NT.hg19.mapq_30.1000.mcool
/data/alv/CTCF_degron/data/RAD21-AID-IAA-6H.hg19.mapq_30.1000.mcool
#PlaB splicing inhibition
/data/alv/CTCF_degron/data/NT-hg19-combined-90000000.mcool
/data/alv/CTCF_degron/data/IAA-hg19-combined-90000000.mcool
/data/alv/CTCF_degron/data/NT-PlaB-hg19-combined-90000000.mcool
/data/alv/CTCF_degron/data/IAA-PlaB-hg19-combined-90000000.mcool
#compare with WT
/data/alv/CTCF_degron/data/WT-44-442-pool/Hap1-WT-combined-500000000.mcool
/data/alv/CTCF_degron/data/WT-44-442-pool/CkoC44-NO-TIR1-pool.mcool
/data/alv/CTCF_degron/data/WT-44-442-pool/CkoCT442-NT-pool-500000000.mcool
/data/alv/CTCF_degron/data/WT-44-442-pool/CkoCT442-IAA-pool-500000000.mcool