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| language: c | ||
| sudo: true | ||
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| deploy: | ||
| provider: pypi | ||
| user: bgruening | ||
| skip_cleanup: true | ||
| password: | ||
| secure: 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 | ||
| secure: 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 | ||
| on: | ||
| tags: true | ||
| distributions: "sdist bdist_wheel" | ||
| distributions: sdist bdist_wheel | ||
| python: | ||
| - 3.6 | ||
| - 3.7 | ||
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| - 3.6 | ||
| - 3.7 | ||
| env: | ||
| - TRAVIS_PYTHON_VERSION=3.6 | ||
| - TRAVIS_PYTHON_VERSION=3.7 | ||
| - TRAVIS_PYTHON_VERSION=3.6 | ||
| - TRAVIS_PYTHON_VERSION=3.7 | ||
| os: | ||
| - linux | ||
| - osx | ||
|
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| stages: | ||
| - lint | ||
| - test | ||
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| before_install: | ||
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| - export HIC_TEST_DATA_DIR="`pwd`/hicmatrix/test/test_data/" | ||
| - echo $HIC_TEST_DATA_DIR | ||
| - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then curl https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh ; fi | ||
| - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then curl https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -o miniconda.sh ; fi | ||
| - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then curl https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh | ||
| -o miniconda.sh ; fi | ||
| - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then curl https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh | ||
| -o miniconda.sh ; fi | ||
| - bash miniconda.sh -b -p $HOME/miniconda | ||
| - PATH_WITHOUT_CONDA="$PATH" | ||
| - export PATH="$HOME/miniconda/bin:$PATH" | ||
| - hash -r | ||
| - conda config --set always_yes yes --set changeps1 no | ||
| - conda update -q conda | ||
| - conda info -a | ||
|
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| install: | ||
| - conda install --yes -c conda-forge -c bioconda python=$TRAVIS_PYTHON_VERSION --file | ||
| requirements.txt | ||
| - conda install --yes -c conda-forge -c bioconda pytest | ||
| - conda install --yes flake8 | ||
| - python setup.py install | ||
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| script: | ||
| - flake8 . --exclude=.venv,.build,planemo_test_env,build --ignore=E501,F401,F403,E402,F999,F405,E712 | ||
| - py.test hicmatrix/test/ --capture=sys | ||
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