-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathcomponents.html
273 lines (251 loc) · 13 KB
/
components.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<!-- The above 3 meta tags *must* come first in the head; any other head content must come *after* these tags -->
<meta name="description" content="ddRPB organisation homepage">
<meta name="author" content="Tomas Skripcak">
<link rel="icon" href="resources/favicon.ico">
<title>ddRPB | data driven radiotherapy clinical research IT</title>
<!-- Bootstrap core CSS -->
<link href="resources/css/bootstrap.min.css" rel="stylesheet">
<!-- Custom styles for this template -->
<link href="resources/rpb.css" rel="stylesheet">
</head>
<body>
<!-- Fork me on github ribbon -->
<span id="forkongithub"><a href="https://github.com/ddRPB/">Fork me on GitHub</a></span>
<nav class="navbar navbar-inverse navbar-fixed-top">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="https://ddrpb.github.io/">ddRPB</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li><a href="features.html">Features</a></li>
<li class="active"><a href="components.html">Components</a></li>
<li><a href="technology.html">Technology</a></li>
<li><a href="impressum.html">Impressum</a></li>
</ul>
</div><!--/.nav-collapse -->
</div>
</nav>
<div class="container">
<!-- Example row of columns -->
<div class="row">
<div class="col-md-12">
<h2>Components</h2>
<p class="text-justify">
The complex nature of radiotherapy research data requires from RPB to deal with data management within different scopes/sub-domains and integrate with several clinical or research IT systems.
</p>
<!-- Accordion -->
<div class="panel-group" id="accordion">
<!-- WP-packages panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse1">Work Packages Diagram</a>
</h3>
</div>
<div id="collapse1" class="panel-collapse collapse in">
<div class="panel-body">
<img class="img-fluid img-thumbnail" src="./resources/img/wp.png" alt="RPB work packages" />
</div>
</div>
</div>
<!-- WP0 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse2">WP0 - link to clinical systems</a>
</h3>
</div>
<div id="collapse2" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">HL7 - <a href="https://www.nextgen.com/products-and-services/integration-engine" target="_new">NextGen Connect</a> healthcare communication and monitoring engine</li>
</ul>
</div>
</div>
</div>
<!-- WP1 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse3">WP1 - patient privacy</a>
</h3>
</div>
<div id="collapse3" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">PID - <a href="https://www.unimedizin-mainz.de/imbei/informatik/ag-verbundforschung/mainzelliste.html" target="_new">Mainzelliste</a> patient identity management and pseudonym generation</li>
</ul>
</div>
</div>
</div>
<!-- WP2 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse4">WP2 - clinical research</a>
</h3>
</div>
<div id="collapse4" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">CTMS - <a href="https://github.com/ddRPB/rpb" target="_new">RPB portal</a> providing integrated access to the platform</li>
<li class="list-group-item">ePRO - <a href="https://github.com/ddRPB/rpb" target="_new">RPB mobile</a> with <a href="https://enketo.org" target="_new">Enketo</a> tablet friendly XForms</li>
<li class="list-group-item">EDC - <a href="https://www.libreclinica.org" target="_new">LibreClinica</a> electronic data capture system</li>
<li class="list-group-item">PROMAN - <a href="https://www.redmine.org/" target="_new">Redmine</a> issue tracking system</li>
</ul>
</div>
</div>
</div>
<!-- WP3 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse5">WP3 - medical imaging</a>
</h3>
</div>
<div id="collapse5" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">PACS - <a href="http://www.natura-ingenium.nl/dicom.html" target="_new">Conquest</a> research DICOM data store</li>
<li class="list-group-item">Uploader - <a href="https://github.com/ddRPB/rpb-uploader" target="_new">RPB uploader</a> for web based de-identification and upload of DICOM data</li>
<li class="list-group-item">Viewer - <a href="https://nroduit.github.io" target="_new">Weasis</a> standalone DICOM-RT viewer</li>
<li class="list-group-item">Processor - <a href="https://www.rsna.org/research/imaging-research-tools" target="_new">Clinical Trials Processor</a> for DICOM pipelines orchestration</li>
</ul>
</div>
</div>
</div>
<!-- WP4 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse6">WP4 - microscopy imaging</a>
</h3>
</div>
<div id="collapse6" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">WSI - DICOM whole slide imaging planned only as third party product integration</li>
</ul>
</div>
</div>
</div>
<!-- WP5 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse7">WP5 - biospecimen data</a>
</h3>
</div>
<div id="collapse7" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">BIO - third party commercial product integration</li>
</ul>
</div>
</div>
</div>
<!-- WP6 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse8">WP6 - laboratory assays data</a>
</h3>
</div>
<div id="collapse8" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">LAB - <a href="https://www.labkey.com/" target="_new">LabKey</a> file repository and data tabulation</li>
</ul>
</div>
</div>
</div>
<!-- WP7 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse9">WP7 - exploration & reporting</a>
</h3>
</div>
<div id="collapse9" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">LAB - study data reload and cross component data aggregation, search and reporting</li>
</ul>
</div>
</div>
</div>
<!-- WP8 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse10">WP8 - platform deployment</a>
</h3>
</div>
<div id="collapse10" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">Depending on trials unit available infrastructure on a site. Recommended is normally virtual machine and container based deployment with dedicated reverse web proxy in demilitarised zone (DMZ).</li>
</ul>
</div>
</div>
</div>
<!-- WP9 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse11">WP9 - link to national and international research platforms</a>
</h3>
</div>
<div id="collapse11" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">DKTK <a href="https://dktk.dkfz.de/forschung/Plattformen-und-Technologie-Netzwerke/klinische-plattformen/ueber-die-ccp" target="_new">CCP</a> - project specific pseudonymisation</li>
<li class="list-group-item">DKTK <a href="https://jip.dktk.dkfz.de" target="_new">JIP</a> - data loading for analytical processing</li>
</ul>
</div>
</div>
</div>
<!-- WP10 panel -->
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">
<a data-toggle="collapse" data-parent="#accordion" href="#collapse12">WP10 - learning database</a>
</h3>
</div>
<div id="collapse12" class="panel-collapse collapse">
<div class="panel-body">
<ul class="list-group">
<li class="list-group-item">LAB - scripting and API for machine learning purposes</li>
</ul>
</div>
</div>
</div>
</div>
</div>
</div>
<hr>
<footer>
<p>© 2013-2024 ddRPB</p>
</footer>
</div> <!-- /container -->
<!-- Bootstrap core JavaScript
================================================== -->
<!-- Placed at the end of the document so the pages load faster -->
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
<script>window.jQuery || document.write('<script src="../../assets/js/vendor/jquery.min.js"><\/script>')</script>
<script src="resources/js/bootstrap.min.js"></script>
</body>
</html>