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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,63 +1,91 @@ | ||
| version: 2.1 | ||
|
|
||
| jobs: | ||
| build: | ||
| parameters: | ||
| python-version: | ||
| type: string | ||
| docker: | ||
| - image: cimg/base:current | ||
| user: root | ||
| steps: | ||
| - checkout | ||
|
|
||
| - run: | ||
| name: Setup micromamba | ||
| name: Install micromamba | ||
| shell: /bin/bash -l | ||
| command: | | ||
| apt update --yes && apt-get upgrade --yes | ||
| apt install -y --no-install-recommends wget ca-certificates git | ||
| cd $HOME | ||
| cd ${HOME} | ||
| curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj bin/micromamba | ||
| eval "$(${HOME}/bin/micromamba shell hook -s posix)" | ||
| - run: | ||
| name: Setup environment | ||
| name: Create RAiDER environment | ||
| shell: /bin/bash -l | ||
| command: | | ||
| eval "$($HOME/bin/micromamba shell hook -s posix)" | ||
| eval "$(${HOME}/bin/micromamba shell hook -s posix)" | ||
| PYTHON_VERSION="<< parameters.python-version >>" | ||
| sed -i "/python>=/c\ - python=${PYTHON_VERSION}" environment.yml | ||
| micromamba create -f environment.yml | ||
| - run: | ||
| name: Install raider and check environment | ||
| shell: /bin/bash -l | ||
| command: | | ||
| eval "$(${HOME}/bin/micromamba shell hook -s posix)" | ||
| micromamba activate RAiDER | ||
| pip install coveralls | ||
| echo url: https://cds.climate.copernicus.eu/api/v2 > $HOME/.cdsapirc | ||
| echo key: $cdsak >> $HOME/.cdsapirc | ||
| echo { > $HOME/.ecmwfapirc | ||
| echo ' "url": "https://api.ecmwf.int/v1",' >> $HOME/.ecmwfapirc | ||
| echo ' "email": "'$ecmwfu'",' >> $HOME/.ecmwfapirc | ||
| echo ' "key": "'$ecmwfk'"' >> $HOME/.ecmwfapirc | ||
| echo } >> $HOME/.ecmwfapirc | ||
| echo url: $NCUMloc > $HOME/.ncmrlogin | ||
| echo username: $NCUMu >> $HOME/.ncmrlogin | ||
| echo password: $NCUMp >> $HOME/.ncmrlogin | ||
| python -m pip install --no-deps . | ||
| python -c "import RAiDER; from RAiDER.delay import tropo_delay" | ||
| python -c "import RAiDER; from RAiDER.interpolator import interp_along_axis" | ||
| python --version | ||
| python -c "import numpy; print(numpy.__version__)" | ||
| python -c "import pyproj; print(pyproj.__version__)" | ||
| - run: | ||
| name: Install RAiDER and test the install | ||
| name: Setup data stores | ||
| shell: /bin/bash -l | ||
| command: | | ||
| eval "$($HOME/bin/micromamba shell hook -s posix)" | ||
| eval "$(${HOME}/bin/micromamba shell hook -s posix)" | ||
| micromamba activate RAiDER | ||
| python -m pip install . | ||
| python -c "import RAiDER; from RAiDER.delay import tropo_delay" | ||
| python -c "import RAiDER; from RAiDER.interpolator import interp_along_axis" | ||
| python -c 'from RAiDER.models.credentials import setup_from_env; setup_from_env()' | ||
| - run: | ||
| name: Run unit tests | ||
| shell: /bin/bash -l | ||
| command: | | ||
| eval "$($HOME/bin/micromamba shell hook -s posix)" | ||
| eval "$(${HOME}/bin/micromamba shell hook -s posix)" | ||
| micromamba activate RAiDER | ||
| COV_OPTIONS=`python -c "import importlib;print(*(' --cov='+p for p in importlib.util.find_spec('RAiDER').submodule_search_locations))"` | ||
| pytest -m "not long" test/ $COV_OPTIONS --cov-report= | ||
| pytest -m "not long" test/ ${COV_OPTIONS} --cov-report= | ||
| - run: | ||
| name: Report coverage | ||
| shell: /bin/bash -l | ||
| command: | | ||
| eval "$($HOME/bin/micromamba shell hook -s posix)" | ||
| micromamba activate RAiDER | ||
| python .circleci/fix_coverage_paths.py .coverage $(pwd)/tools/RAiDER/ | ||
| coverage report -mi | ||
| coveralls | ||
| PYTHON_VERSION="<< parameters.python-version >>" | ||
| if [ "${PYTHON_VERSION}" == "3.12" ]; then | ||
| eval "$(${HOME}/bin/micromamba shell hook -s posix)" | ||
| micromamba activate RAiDER | ||
| python -m pip install coveralls | ||
| python .circleci/fix_coverage_paths.py .coverage ${PWD}/tools/RAiDER/ | ||
| coverage report -mi | ||
| coveralls | ||
| fi | ||
| workflows: | ||
| all-tests: | ||
| jobs: | ||
| - build: | ||
| matrix: | ||
| parameters: | ||
| python-version: ["3.9", "3.10", "3.11", "3.12"] |
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