samplePBSScript.txt

#PBS -A open
#PBS -l nodes=1:ppn=1
#PBS -l walltime=48:00:00
#PBS -l pmem=8gb
#PBS -o /path/to//PBS/output
#PBS -e /path/to/PBS/error

## Load MATLAB ##
module load matlab/R2017b

## Set Parameter File Information ##
paramsFilename=params_XXX.mat
paramsFileFullpath=/path/to/$paramsFile

## Run Preprocessing ##
matlab -nodisplay -nosplash -nodesktop -r "commandFlag=1;file=$paramsFilename;load($paramsFileFullpath);run(which('multi-FRAME/modeling/preprocessData.m'));quit"

## Specify Model ##
#matlab -nodisplay -nosplash -nodesktop -r "commandFlag=1;file=$paramsFilename;load($paramsFileFullpath);run(which('multi-FRAME/modeling/speciyModel.m'));quit"

## Estimate Model ##
#matlab -nodisplay -nosplash -nodesktop -r "commandFlag=1;file=$paramsFilename;load($paramsFileFullpath);run(which('multi-FRAME/modeling/estimateModel.m'));quit"

## Run MVPA Classification ##
#matlab -nodisplay -nosplash -nodesktop -r "commandFlag=1;file=$paramsFilename;load($paramsFileFullpath);run(which('multi-FRAME/analyses/runMVPAClassification.m'));quit"