-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathmetadata.yaml
366 lines (366 loc) · 9.71 KB
/
metadata.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
about:
- name: epilepsy
schemaKey: Disorder
- name: hippocampus
schemaKey: Anatomy
access:
- schemaKey: AccessRequirements
status: dandi:OpenAccess
assetsSummary:
approach:
- name: electrophysiological approach
schemaKey: ApproachType
dataStandard:
- identifier: RRID:SCR_015242
name: Neurodata Without Borders (NWB)
schemaKey: StandardsType
measurementTechnique:
- name: multi electrode extracellular electrophysiology recording technique
schemaKey: MeasurementTechniqueType
- name: surgical technique
schemaKey: MeasurementTechniqueType
numberOfBytes: 192373252150
numberOfFiles: 69
numberOfSubjects: 69
schemaKey: AssetsSummary
species:
- identifier: http://purl.obolibrary.org/obo/NCBITaxon_9606
name: Homo sapiens - Human
schemaKey: SpeciesType
variableMeasured:
- ElectricalSeries
- ElectrodeGroup
citation: "Andrews, John P.; Geng, Jinghui; Voitiuk, Kateryna; Elliott, Matthew A.
T.; Shin, David; Robbins, Ash; Spaeth, Alex; Wang, Albert; Li, Lin; Solis, Daniel;
Keefe, Matthew G.; Sevetson, Jessica L.; Rivera de Jes\xFAs, Julio A.; Donohue,
Kevin; Larson, H. Hanh; Ehrlich, Drew; Auguste, Kurtis I.; Salama, Sofie R.; Sohal,
Vikaas; Sharf, Tal; Haussler, David; Cadwell, Cathryn; Schaffer, David; Chang, Edward
F.; Teodorescu, Mircea; Nowakowski, Tomasz J. (2024) Multimodal evaluation of network
activity and optogenetic interventions in human hippocampal slices (Version draft)
[Data set]. DANDI archive. https://dandiarchive.org/dandiset/001132/draft"
contributor:
- email: John.Andrews@ucsf.edu
identifier: 0000-0002-8025-1525
includeInCitation: true
name: Andrews, John P.
roleName:
- dcite:Researcher
- dcite:Author
- dcite:ContactPerson
schemaKey: Person
- email: jgeng2@ucsc.edu
identifier: 0000-0002-3431-9568
includeInCitation: true
name: Geng, Jinghui
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- awardNumber: ''
email: kvoitiuk@ucsc.edu
identifier: 0000-0002-6392-5188
includeInCitation: true
name: Voitiuk, Kateryna
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0001-6313-6819
includeInCitation: true
name: Elliott, Matthew A. T.
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0001-7029-089X
includeInCitation: true
name: Shin, David
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0002-5556-8547
includeInCitation: true
name: Robbins, Ash
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0003-0702-3945
includeInCitation: true
name: Spaeth, Alex
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0001-5989-4617
includeInCitation: true
name: Wang, Albert
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- includeInCitation: true
name: Li, Lin
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- includeInCitation: true
name: Solis, Daniel
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0002-2477-2975
includeInCitation: true
name: Keefe, Matthew G.
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0001-7434-1447
includeInCitation: true
name: Sevetson, Jessica L.
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0001-7562-2849
includeInCitation: true
name: "Rivera de Jes\xFAs, Julio A."
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0002-4237-5957
includeInCitation: true
name: Donohue, Kevin
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- includeInCitation: true
name: Larson, H. Hanh
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0001-6794-6800
includeInCitation: true
name: Ehrlich, Drew
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0002-1607-0818
includeInCitation: true
name: Auguste, Kurtis I.
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0001-6999-7193
includeInCitation: true
name: Salama, Sofie R.
roleName:
- dcite:Author
- dcite:FundingAcquisition
- dcite:Supervision
schemaKey: Person
- identifier: 0000-0002-2238-4186
includeInCitation: true
name: Sohal, Vikaas
roleName:
- dcite:Author
- dcite:Researcher
schemaKey: Person
- identifier: 0000-0002-7899-2818
includeInCitation: true
name: Sharf, Tal
roleName:
- dcite:Author
- dcite:Researcher
- dcite:Supervision
schemaKey: Person
- identifier: 0000-0003-1533-4575
includeInCitation: true
name: Haussler, David
roleName:
- dcite:Author
- dcite:Researcher
- dcite:FundingAcquisition
- dcite:Supervision
schemaKey: Person
- awardNumber: ''
identifier: 0000-0003-1963-8285
includeInCitation: true
name: Cadwell, Cathryn
roleName:
- dcite:Author
- dcite:Researcher
- dcite:Supervision
schemaKey: Person
- identifier: 0000-0002-9625-0121
includeInCitation: true
name: Schaffer, David
roleName:
- dcite:Author
- dcite:Researcher
- dcite:Supervision
schemaKey: Person
- identifier: 0000-0003-2480-4700
includeInCitation: true
name: Chang, Edward F.
roleName:
- dcite:Author
- dcite:Investigation
- dcite:Supervision
schemaKey: Person
- email: mteodore@ucsc.edu
identifier: 0000-0001-7085-5248
includeInCitation: true
name: Teodorescu, Mircea
roleName:
- dcite:Author
- dcite:ContactPerson
- dcite:Investigation
- dcite:FundingAcquisition
- dcite:Supervision
schemaKey: Person
- awardNumber: ''
email: tomasz.nowakowski@ucsf.edu
identifier: 0000-0003-2345-4964
includeInCitation: true
name: Nowakowski, Tomasz J.
roleName:
- dcite:Author
- dcite:ContactPerson
- dcite:FundingAcquisition
- dcite:Investigation
- dcite:Supervision
schemaKey: Person
- awardNumber: 5R25NS070680-13, UF1MH130700, R01NS123263, R01MH120295, 5RM1HG011543,
T32HG012344, K08NS126573, K12GM139185, LRP0000018281
includeInCitation: false
name: National Institutes of Health
roleName:
- dcite:Funder
schemaKey: Organization
- awardNumber: 2034037, CNS-1730158, ACI-1540112, ACI-1541349, OAC-1826967
includeInCitation: false
name: National Science Foundation
roleName:
- dcite:Funder
schemaKey: Organization
- awardNumber: SF 857
includeInCitation: false
name: Schmidt Futures Foundation
roleName:
- dcite:Funder
schemaKey: Organization
- awardNumber: U01NS132353
includeInCitation: false
name: Weill Neurohub
roleName:
- dcite:Funder
schemaKey: Organization
- awardNumber: ''
includeInCitation: false
name: Esther A & Joseph Klingenstein Fund
roleName:
- dcite:Funder
schemaKey: Organization
- includeInCitation: false
name: 'Shurl and Kay Curci Foundation '
roleName:
- dcite:Funder
schemaKey: Organization
- includeInCitation: false
name: Sontag Foundation
roleName:
- dcite:Funder
schemaKey: Organization
- includeInCitation: false
name: William K. Bowes, Jr. Foundation
roleName:
- dcite:Funder
schemaKey: Organization
dateCreated: '2024-08-02T00:38:33.938905+00:00'
datePublished: '2024-11-30T19:03:32.497793+00:00'
description: High-density microelectrode array (HD-MEA) recordings of human hippocampal
brain slices obtained from epilepsy patients, including optogenetic stimulus and
several hyperactivity-provoking conditions of culture medium. This data accompanies
the manuscript by Andrews, Geng, Voitiuk, et al. 2024.
ethicsApproval: []
id: DANDI:001132/draft
identifier: DANDI:001132
keywords:
- hippocampus
- slice
- HD-MEA
- optogenetics
- epilepsy
- epileptiform activity
- human hippocampus
- responsive neuromodulation
- AAV
- gene therapy
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://api.dandiarchive.org/api/dandisets/001132/versions/draft/assets/
name: Multimodal evaluation of network activity and optogenetic interventions in human
hippocampal slices
protocol: []
publishedBy:
endDate: '2024-11-30T19:03:32.497793+00:00'
id: urn:uuid:276890db-0dea-4620-9e0b-e11751460075
name: DANDI publish
schemaKey: PublishActivity
startDate: '2024-11-30T19:03:32.497793+00:00'
wasAssociatedWith:
- id: urn:uuid:4c7efb26-9f8d-40e7-98f0-947cd857cade
identifier: RRID:SCR_017571
name: DANDI API
schemaKey: Software
version: 0.1.0
relatedResource:
- identifier: https://doi.org/10.1038/s41593-024-01782-5
name: Multimodal evaluation of network activity and optogenetic interventions in
human hippocampal slices
relation: dcite:IsPublishedIn
repository: Nature Neuroscience
resourceType: dcite:JournalArticle
schemaKey: Resource
url: https://www.nature.com/articles/s41593-024-01782-5
- identifier: ''
name: Supplementary code and other data
relation: dcite:HasPart
repository: GitHub
resourceType: dcite:Other
schemaKey: Resource
url: https://github.com/braingeneers/AndrewsGengVoitiukEtAl_SourceCode
- identifier: https://doi.org/10.1101/2024.11.14.623530
name: Multiscale Cloud-based Pipeline for Neuronal Electrophysiology Analysis and
Visualization
relation: dcite:Describes
repository: bioRxiv
resourceType: dcite:Preprint
schemaKey: Resource
url: https://www.biorxiv.org/content/10.1101/2024.11.14.623530v1
- identifier: https://doi.org/10.1101/2024.11.13.623525
name: Pathological microcircuits initiate epileptiform events in patient hippocampal
slices
relation: dcite:Describes
repository: bioRxiv
resourceType: dcite:Preprint
schemaKey: Resource
url: https://www.biorxiv.org/content/10.1101/2024.11.13.623525v1
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.8
studyTarget: []
url: https://dandiarchive.org/dandiset/001132/draft
version: draft
wasGeneratedBy: []