metadata.yaml

about: []
access:
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  status: dandi:OpenAccess
acknowledgement: ''
assetsSummary:
  approach:
  - name: electrophysiological approach
    schemaKey: ApproachType
  dataStandard:
  - identifier: RRID:SCR_015242
    name: Neurodata Without Borders (NWB)
    schemaKey: StandardsType
  measurementTechnique:
  - name: surgical technique
    schemaKey: MeasurementTechniqueType
  - name: multi electrode extracellular electrophysiology recording technique
    schemaKey: MeasurementTechniqueType
  numberOfBytes: 484961742641
  numberOfFiles: 9
  numberOfSubjects: 5
  schemaKey: AssetsSummary
  species:
  - identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
    name: Mus musculus - House mouse
    schemaKey: SpeciesType
  variableMeasured:
  - ElectrodeGroup
  - ElectricalSeries
citation: Ye, Zhiwen; Shaker, Jordan; Steinmetz, Nicholas (2024) Neuropixels Ultra
  Probe Imposed Motion Dataset (Version draft) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000957/draft
contributor:
- affiliation:
  - identifier: https://ror.org/00cvxb145
    name: University of Washington
    schemaKey: Affiliation
  email: yezhiwen@uw.edu
  identifier: 0000-0003-4311-1037
  includeInCitation: true
  name: Ye, Zhiwen
  roleName:
  - dcite:ContactPerson
  - dcite:DataCollector
  schemaKey: Person
- email: jshaker@uw.edu
  includeInCitation: true
  name: Shaker, Jordan
  roleName:
  - dcite:DataCollector
  schemaKey: Person
- email: nick.steinmetz@gmail.com
  identifier: 0000-0001-7029-2908
  includeInCitation: true
  name: Steinmetz, Nicholas
  roleName:
  - dcite:ProjectManager
  schemaKey: Person
- awardNumber: NIH BRAIN Initiative (U01NS113252)
  identifier: https://ror.org/01cwqze88
  includeInCitation: false
  name: NIH
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dateCreated: '2024-04-04T02:49:30.994898+00:00'
datePublished: '2024-07-31T02:49:27.683692+00:00'
description: "Neuropixels Ultra Probe Imposed Motion Dataset provides a dataset, where
  neural activity was recorded with Neuropixels Ultra (NP Ultra) in awake mouse visual
  cortex.  NP Ultra probe measures neural activity at ultra-high density, with 6-micron
  center-to-center spacing between sites, in 8x48 site configuration (total width
  x length: 48 x 288 micron). \n\nProbe up-down motion was artificially imposed in
  the brain tissue during brain recording. A total of 10 steps forward and 9 alternating
  steps\nbackwards were imposed for each session, with 25 \u03BCm travel in each direction
  at 1 \u03BCm/sec speed. This results in 25 micron net displacement by the end of
  the imposed motion.\n\n118 natural images were presented at random times with repetition
  before and after imposed motion, for \"fingerprinting\" the identities of the visual
  cortical neurons with their unique visual responses.\n\nThis dataset provides an
  opportunity for designing and testing spike sorting algorithms, with neural activity
  sampled at an unprecedented spatiotemporal resolution.(1) Manually imposed motion
  and (2)neural identification with visual responses pre- and post- motion provide
  ground truth reference for testing the accuracy of motion correction and spike sorting."
ethicsApproval: []
id: DANDI:000957/draft
identifier: DANDI:000957
keywords:
- Neuropixels ultra, imposed motion, V1
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://api.dandiarchive.org/api/dandisets/000957/versions/draft/assets/
name: Neuropixels Ultra Probe Imposed Motion Dataset
protocol: []
publishedBy:
  endDate: '2024-07-31T02:49:27.683692+00:00'
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  name: DANDI publish
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  startDate: '2024-07-31T02:49:27.683692+00:00'
  wasAssociatedWith:
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    identifier: RRID:SCR_017571
    name: DANDI API
    schemaKey: Software
    version: 0.1.0
relatedResource:
- identifier: 10.1101/2023.08.23.554527
  name: Ultra-high density electrodes improve detection, yield, and cell type specificity
    of brain recordings
  relation: dcite:IsSupplementTo
  repository: bioRxiv
  resourceType: dcite:Dataset
  schemaKey: Resource
  url: https://www.biorxiv.org/content/10.1101/2023.08.23.554527v2
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.7
studyTarget:
- sampling neural activity during probe-brain motion at an unprecedented spatiotemporal
  resolution
url: https://dandiarchive.org/dandiset/000957/draft
version: draft
wasGeneratedBy: []