metadata.yaml

about: []
access:
- schemaKey: AccessRequirements
  status: dandi:OpenAccess
assetsSummary:
  approach:
  - name: microscopy approach; cell population imaging
    schemaKey: ApproachType
  - name: behavioral approach
    schemaKey: ApproachType
  dataStandard:
  - identifier: RRID:SCR_015242
    name: Neurodata Without Borders (NWB)
    schemaKey: StandardsType
  measurementTechnique:
  - name: analytical technique
    schemaKey: MeasurementTechniqueType
  - name: surgical technique
    schemaKey: MeasurementTechniqueType
  - name: behavioral technique
    schemaKey: MeasurementTechniqueType
  - name: two-photon microscopy technique
    schemaKey: MeasurementTechniqueType
  numberOfBytes: 2484974036912
  numberOfFiles: 151
  numberOfSubjects: 13
  schemaKey: AssetsSummary
  species:
  - identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
    name: Mus musculus - House mouse
    schemaKey: SpeciesType
  variableMeasured:
  - ProcessingModule
  - SpatialSeries
  - PlaneSegmentation
  - OpticalChannel
  - BehavioralTimeSeries
  - ImagingPlane
  - PupilTracking
  - TwoPhotonSeries
citation: "Gillon, Colleen J.; Lecoq, J\xE9r\xF4me A.; Pina, Jason E.; Zylberberg,
  Joel; Richards, Blake A. (2024) Allen Institute Openscope - Responses to inconsistent
  stimuli in somata and distal apical dendrites in primary visual cortex (Version
  draft) [Data set]. DANDI archive. https://doi.org/10.80507/dandi.123456/0.123456.1234"
contributor:
- affiliation:
  - identifier: https://ror.org/03dbr7087
    name: University of Toronto
    schemaKey: Affiliation
  email: colleen.gillon@mail.utoronto.ca
  identifier: 0000-0002-2253-7816
  includeInCitation: true
  name: Gillon, Colleen J.
  roleName:
  - dcite:Author
  - dcite:ContactPerson
  - dcite:DataCurator
  - dcite:FormalAnalysis
  schemaKey: Person
  url: https://colleenjg.github.io/
- affiliation:
  - identifier: https://ror.org/03cpe7c52
    name: Allen Institute
    schemaKey: Affiliation
  email: jeromel@alleninstitute.org
  identifier: 0000-0002-0131-0938
  includeInCitation: true
  name: "Lecoq, J\xE9r\xF4me A."
  roleName:
  - dcite:Author
  - dcite:Conceptualization
  - dcite:ContactPerson
  - dcite:DataCollector
  - dcite:DataCurator
  - dcite:FundingAcquisition
  - dcite:Resources
  - dcite:Supervision
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/05fq50484
    name: York University
    schemaKey: Affiliation
  identifier: 0000-0003-1385-8762
  includeInCitation: true
  name: Pina, Jason E.
  roleName:
  - dcite:Author
  - dcite:DataCollector
  - dcite:FormalAnalysis
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/05fq50484
    name: York University
    schemaKey: Affiliation
  email: joelzy@yorku.ca
  identifier: 0000-0002-8208-5698
  includeInCitation: true
  name: Zylberberg, Joel
  roleName:
  - dcite:Author
  - dcite:Conceptualization
  - dcite:FormalAnalysis
  - dcite:Supervision
  schemaKey: Person
- affiliation:
  - identifier: https://ror.org/01pxwe438
    name: McGill University
    schemaKey: Affiliation
  - identifier: https://ror.org/05c22rx21
    name: Mila - Quebec Artificial Intelligence Institute
    schemaKey: Affiliation
  email: blake.richards@mcgill.ca
  identifier: 0000-0001-9662-2151
  includeInCitation: true
  name: Richards, Blake A.
  roleName:
  - dcite:Author
  - dcite:Conceptualization
  - dcite:FormalAnalysis
  - dcite:Supervision
  schemaKey: Person
- contactPoint: []
  identifier: https://ror.org/03cpe7c52
  includeInCitation: false
  name: Allen Institute
  roleName:
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  schemaKey: Organization
  url: https://alleninstitute.org/
- contactPoint: []
  includeInCitation: false
  name: Falconwood Foundation
  roleName:
  - dcite:Funder
  schemaKey: Organization
- contactPoint: []
  identifier: https://ror.org/01h531d29
  includeInCitation: false
  name: Natural Sciences and Engineering Research Council
  roleName:
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  schemaKey: Organization
  url: http://www.nserc-crsng.gc.ca/index_eng.asp
- contactPoint: []
  identifier: https://ror.org/01sdtdd95
  includeInCitation: false
  name: Canadian Institute for Advanced Research
  roleName:
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  schemaKey: Organization
  url: http://www.cifar.ca/
- contactPoint: []
  identifier: https://ror.org/052csg198
  includeInCitation: false
  name: Alfred P. Sloan Foundation
  roleName:
  - dcite:Funder
  schemaKey: Organization
  url: http://www.sloan.org/
- contactPoint: []
  identifier: https://ror.org/0517h6h17
  includeInCitation: false
  name: Canada Research Chairs
  roleName:
  - dcite:Funder
  schemaKey: Organization
  url: http://www.chairs-chaires.gc.ca/home-accueil-eng.aspx
- contactPoint: []
  identifier: https://ror.org/015pzp858
  includeInCitation: false
  name: Government of Ontario
  roleName:
  - dcite:Funder
  schemaKey: Organization
  url: https://www.ontario.ca/page/government
dateCreated: '2020-08-25T20:45:51.826000+00:00'
datePublished: '2024-02-09T16:23:24.565058+00:00'
description: "This dataset was collected for the Credit Assignment project, as part
  of the Allen Institute for Brain Science's OpenScope project. The most up-to-date
  links to the publications associated with this dataset (a dataset descriptor paper
  and an analysis paper) can be found by going to the metadata Github repository,
  linked below.\n\nBriefly, mice were habituated to head-fixation on a running disc
  over a period of 11 days. Over the last 6 days, mice were presented with repeating
  stimulus sequences, with consistent features. These sessions are not included in
  the dataset, as imaging was not performed. Following habituation, sequences with
  inconsistent features were introduced over three sessions, while two-photon calcium
  imaging was performed in pyramidal neurons of primary visual cortex (VisP). Specifically,
  recordings for each mouse were made in one of four planes: L2/3 somata, L5 somata,
  L2/3 distal apical dendrites or L5 distal apical dendrites. As mice gained experience
  with the inconsistent sequences, responses to these events were found to evolve
  in opposite ways in the dendritic and somatic compartments.\n\nThe dataset includes
  50 sessions total, recorded in 13 subjects, with at least 3 sessions per subject.
  Each session file includes: **(1)** ROI dF/F traces, **(2)** ROI masks, **(3)**
  ROI tracking information (where applicable), **(4)** running velocity traces, **(5)**
  pupil diameter traces, **(6)** pupil centroid position traces in x and y, **(7)**
  stimulus parameters. Note that gaze was not computed for this dataset. What is provided
  is the position of the pupil centroid in the pupil recording videos. In addition,
  a second, slightly larger version of each file was created, also including: **(8)**
  stimulus frame images (identifiable by `+image` in the file name). Lastly, a third,
  much larger version of each file was created, also including: **(9)** the motion
  corrected imaging stack (identifiable by `_obj-raw` in the file name).\n\nCertain
  sessions in this dataset were excluded from our analyses for quality control reasons.
  They are provided here, as the reasons we excluded them from our analyses may not
  pose a problem for all use cases. The metadata Github repository, linked below,
  provides detailed information about each session. \n\nRelease notes for each version
  of the dataset are provided in the CHANGES file."
doi: 10.80507/dandi.123456/0.123456.1234
ethicsApproval:
- contactPoint:
    schemaKey: ContactPoint
  identifier: Allen Institute Institutional Animal Care and Use Committee (IACUC),
    protocol 1801
  schemaKey: EthicsApproval
id: DANDI:000037/draft
identifier: DANDI:000037
keywords:
- learning
- neocortex
- pyramidal neurons
- distal apical dendrites
- somata
- L2/3
- L5
- two-photon calcium imaging
- mouse VisP
- prediction
- credit assignment
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://api.dandiarchive.org/api/dandisets/000037/versions/draft/assets/
name: Allen Institute Openscope - Responses to inconsistent stimuli in somata and
  distal apical dendrites in primary visual cortex
protocol:
- https://doi.org/10.1038/s41593-019-0550-9
publishedBy:
  endDate: '2024-02-09T16:23:24.565058+00:00'
  id: urn:uuid:4e894d54-c6c7-4d2c-8f29-7ecdf1034b29
  name: DANDI publish
  schemaKey: PublishActivity
  startDate: '2024-02-09T16:23:24.565058+00:00'
  wasAssociatedWith:
  - id: urn:uuid:415bdd6b-87c1-41b9-ad67-71a99ecfbd5e
    identifier: RRID:SCR_017571
    name: DANDI API
    schemaKey: Software
    version: 0.1.0
relatedResource:
- identifier: 10.1038/s41597-023-02214-y
  name: Dataset description paper
  relation: dcite:IsPublishedIn
  repository: Scientific Data
  schemaKey: Resource
  url: https://www.nature.com/articles/s41597-023-02214-y
- identifier: cred_assign_stimuli
  name: Stimulus code
  relation: dcite:IsSupplementedBy
  repository: GitHub
  schemaKey: Resource
  url: https://github.com/colleenjg/cred_assign_stimuli
- identifier: '10.1523/JNEUROSCI.1009-23.2023 '
  name: Analysis paper
  relation: dcite:IsPublishedIn
  repository: Journal of Neuroscience
  schemaKey: Resource
  url: https://www.jneurosci.org/content/44/5/e1009232023
- identifier: OpenScope_CA_Analysis
  name: Analysis code
  relation: dcite:IsSupplementedBy
  repository: GitHub
  schemaKey: Resource
  url: https://github.com/colleenjg/OpenScope_CA_Analysis
- identifier: credit_assignement
  name: Metadata
  relation: dcite:HasMetadata
  repository: GitHub
  schemaKey: Resource
  url: https://github.com/jeromelecoq/allen_openscope_metadata/tree/master/projects/credit_assignement
- identifier: 10.1101/2021.01.15.426915
  name: bioRxiv paper
  relation: dcite:IsDescribedBy
  repository: bioRxiv
  schemaKey: Resource
  url: https://www.biorxiv.org/content/10.1101/2021.01.15.426915
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.4
studyTarget:
- How do unexpected events shape activity in the neocortical microcircuit, across
  experience?
url: https://dandiarchive.org/dandiset/000037/draft
version: draft
wasGeneratedBy: []