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Upgrade pydra and pynwb in matlab image #227

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Feb 7, 2025
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Upgrade pydra and pynwb in matlab image #227

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2 changes: 1 addition & 1 deletion images/Dockerfile.matlab
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
ARG MATLAB_RELEASE=r2024b
FROM --platform=linux/amd64 ghcr.io/mathworks-ref-arch/matlab-integration-for-jupyter/jupyter-matlab-notebook:${MATLAB_RELEASE}

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FROM --platform flag should not use a constant value 

FromPlatformFlagConstDisallowed: FROM --platform flag should not use constant value "linux/amd64"
More info: https://docs.docker.com/go/dockerfile/rule/from-platform-flag-const-disallowed/

USER root

Expand All @@ -13,7 +13,7 @@

RUN pip install --no-cache-dir datalad 'h5py>3.3' zarr pyopenssl plotly jupyter_bokeh jupytext nbgitpuller datalad_container \
datalad-osf dandi nibabel nilearn pybids spikeinterface neo \
'pydra>=0.17' 'pynwb>=2.3.1' 'nwbwidgets>=0.10.2' hdf5plugin s3fs h5netcdf "xarray[io]" \
'pydra>=0.25' 'pynwb>=2.8.3' 'nwbwidgets>=0.10.2' hdf5plugin s3fs h5netcdf "xarray[io]" \
aicsimageio kerchunk 'neuroglancer>=2.28' cloud-volume ipywidgets ome-zarr \
webio_jupyter_extension https://github.com/balbasty/dandi-io/archive/refs/heads/main.zip \
tensorstore anndata tensorflow
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