DESCRIPTION

Package: MungeSumstats
Type: Package
Title: Standardise summary statistics from GWAS
Version: 1.1.24
Authors@R:
    c(person(given = "Alan",
           family = "Murphy",
           role = c("aut","cre"),
           email = "alanmurph94@hotmail.com",
           comment = c(ORCID = "0000-0002-2487-8753")),
     person(given = "Brian",
           family = "Schilder",
           role = c("ctb"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191")),
    person(given = "Nathan",
           family = "Skene",
           role = c("aut"),
           email = "nathan.skene@gmail.com",
           comment = c(ORCID = "0000-0002-6807-3180"))) 
Description: 
  The *MungeSumstats* package is designed to facilitate the standardisation of 
  GWAS summary statistics. It reformats inputted summary statisitics to include 
  SNP, CHR, BP and can look up these values if any are missing. It also removes 
  duplicates across SNPs.
URL: https://github.com/neurogenomics/MungeSumstats
BugReports: https://github.com/neurogenomics/MungeSumstats/issues
License: Artistic-2.0
Depends: R(>= 4.1)
Imports: 
    magrittr, 
    data.table,
    utils,
    R.utils,
    dplyr, 
    stats,
    GenomicRanges,
    GenomeInfoDb,
    BSgenome,
    Biostrings,
    VariantAnnotation,
    stringr, 
    googleAuthR,
    httr,
    jsonlite,
    methods,
    parallel,
    rtracklayer
biocViews: 
    SNP, WholeGenome, Genetics, ComparativeGenomics, 
    GenomeWideAssociation, GenomicVariation, Preprocessing 
RoxygenNote: 7.1.1
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Suggests: 
    SNPlocs.Hsapiens.dbSNP144.GRCh37,
    SNPlocs.Hsapiens.dbSNP144.GRCh38,
    BSgenome.Hsapiens.1000genomes.hs37d5,
    BSgenome.Hsapiens.NCBI.GRCh38, 
    BiocGenerics,
    IRanges,
    S4Vectors,
    rmarkdown,
    markdown,
    knitr,
    testthat (>= 3.0.0),
    UpSetR,
    BiocStyle,
    covr
Config/testthat/edition: 3
VignetteBuilder: knitr