Multisession modeling functionality for AutoLFADS #364
Workflow file for this run
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| # This is a basic workflow to help you get started with Actions | |
| name: CI | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the reorganize branch | |
| push: | |
| branches: [ master, develop ] | |
| pull_request: | |
| branches: [ master, develop ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Initialize docker: | |
| services: | |
| localstack: | |
| image: localstack/localstack | |
| ports: | |
| - 4566:4566 | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - name: Setup | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| # Log in to docker hub. | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| # Runs a single command using the runners shell | |
| - name: Installation | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; | |
| bash miniconda.sh -b -p $HOME/miniconda | |
| source "$HOME/miniconda/etc/profile.d/conda.sh" | |
| hash -r | |
| conda config --set always_yes yes --set changeps1 no | |
| conda update -q conda | |
| conda config --append envs_dirs $HOME/miniconda/envs | |
| conda create -n neurocaas | |
| conda activate neurocaas | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install aws-sam-cli==0.53.0 | |
| pip install localstack==0.12.3 | |
| pip install ./ | |
| sudo apt-get install jq | |
| - name: Pull hello-world image | |
| run: docker pull hello-world | |
| - name: Run tests | |
| run: | | |
| echo $HOME $GITHUB_WORKSPACE "locations." | |
| ls $HOME/miniconda/bin | |
| ls $HOME/miniconda/envs | |
| conda config --describe envs_dirs | |
| conda env list | |
| pytest tests/protocol_tests/test_submit_start.py | |
| env: | |
| AWS_DEFAULT_REGION: "us-east-1" | |