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Further reproducibility wish-list #45

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3 of 7 tasks
rsuchecki opened this issue Sep 3, 2019 · 0 comments
Open
3 of 7 tasks

Further reproducibility wish-list #45

rsuchecki opened this issue Sep 3, 2019 · 0 comments
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@rsuchecki
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rsuchecki commented Sep 3, 2019

Tool version capture beyond container tag.

  • Add version command run and parse template to each tool def in mapper.config
  • Add process def to run the version command
  • Weave into the meta

Storage for singularity images built from docker (a few gigs only)

  • Ideally via api calls to an appropriate repository
  • minimum - capture and make the exact container images available for any published results

Explicitly machine-readable output

We already output formatted results and metadata, additional formatting, standardisation will be required

  • Identify relevant standards
  • Apply the standards to outputs and metadata
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