From 7205c1c3c858bc30de5163d5a6938d9e25405069 Mon Sep 17 00:00:00 2001
From: Rad Suchecki <rsuchecki@users.noreply.github.com>
Date: Fri, 22 Nov 2019 16:50:31 +1030
Subject: [PATCH] Feature/task resources in meta (#55)

* bug fix

* params not captured in meta

* timestamp in results release tag

* date in release tag, release body update

* removed beers remnants

* release body update

* iso date/time in release tag

* release body formatting

* tidy-up release

* update

* updated docu

* added --subset option

* cleanup

* nf trace populated later #52
---
 main.nf | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/main.nf b/main.nf
index ab4c10a..bf9c418 100644
--- a/main.nf
+++ b/main.nf
@@ -548,6 +548,7 @@ process mapSimulatedReads {
 
   script:
     def binding = [ref: ref, reads: reads, task: task.clone(), ALIGN_PARAMS: ALIGN_PARAMS]
+    meta.resources = task.subMap(['cpus','memory','time'])
     if(run.template) { //if template file specified / declared
       template run.template //either default or explicit template file name
     } else { //indexing script defined in config
@@ -578,7 +579,7 @@ process evaluateAlignmentsRNF {
   script:
   // println prettyPrint(toJson(alignmeta))
   // println alignmeta.inspect()
-
+  // println groovy.json.JsonOutput.prettyPrint(jsonGenerator.toJson(meta))
   """
   set -eo pipefail
   samtools view ${samOrBam} \