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Raise exceptions when needed; various bug fixes in error handling

RalfGpushed 2 commits to bug-fixes • ea2c7b9…0f56a6f • 
on Jan 31

last fixes

hramdasanpushed 1 commit to bug-fixes • 76a3a4c…ea2c7b9 • 
on Jan 24

Linting and improved exception handling and logging

RalfGpushed 1 commit to bug-fixes • fcf6460…76a3a4c • 
on Jan 23

Deleted branch

RalfGdeleted update-pyproject • 
on Nov 15, 2024

Deleted branch

RalfGdeleted fixes • 
on Nov 15, 2024

Deleted branch

RalfGdeleted cache-residue-encoding • 
on Nov 15, 2024

first fixes

hramdasancreated bug-fixes • fcf6460 • 
on Nov 14, 2024

fix edge_softmax implementation

akensertpushed 1 commit to main • 6cede57…8927de2 • 
on Sep 19, 2024

comment out edge_weight

akensertpushed 1 commit to main • b1363e5…6cede57 • 
on Jun 21, 2024

add gatv2

akensertpushed 1 commit to main • bb6aaed…b1363e5 • 
on Jun 21, 2024

update example notebook

akensertpushed 1 commit to main • 784e169…bb6aaed • 
on Jun 21, 2024

change default masking rate values, and update example notebook

akensertpushed 1 commit to main • 7b010c3…784e169 • 
on Jun 21, 2024

add pretraining modules

akensertpushed 1 commit to main • a92e4d2…7b010c3 • 
on Jun 21, 2024

Merge pull request #4 from compomics/cache-residue-encoding

Pull request merge
akensertpushed 3 commits to main • 950bc83…a92e4d2 • 
on May 16, 2024

Fix addition assignment operator issue in GINConv (see https://discus…

RalfGpushed 1 commit to cache-residue-encoding • f75e9aa…ef16038 • 
on May 16, 2024

Add caching for encoding individual residues in PeptideGraphEncoder

RalfGcreated cache-residue-encoding • f75e9aa • 
on May 16, 2024

Update example notebook

RalfGpushed 1 commit to fixes • 782e1e7…04f9157 • 
on May 13, 2024

Merge pull request #3 from compomics/fixes

Pull request merge
akensertpushed 3 commits to main • bafbdf2…950bc83 • 
on May 13, 2024

Fix collate_fn when batch also includes label

RalfGcreated fixes • 782e1e7 • 
on May 13, 2024

Merge pull request #2 from compomics/update-pyproject

Pull request merge
akensertpushed 2 commits to main • cd50b19…bafbdf2 • 
on Apr 25, 2024

Fix package discovery

RalfGcreated update-pyproject • bcd8ce5 • 
on Apr 24, 2024

improve readability

akensertpushed 1 commit to main • 155bed1…cd50b19 • 
on Apr 15, 2024

rewrite code for peptides, including residue readout

akensertpushed 1 commit to main • 8b21faf…155bed1 • 
on Apr 15, 2024

Deleted branch

akensertdeleted pyproject • 
on Apr 12, 2024

Merge pull request #1 from compomics/pyproject

Pull request merge
akensertpushed 11 commits to main • 9a88c5d…8b21faf • 
on Apr 12, 2024

Fix linting errors

RalfGpushed 1 commit to pyproject • b1451bc…1c8b053 • 
on Apr 11, 2024

Merge branch 'main' of https://github.com/compomics/molexpress into p…

RalfGpushed 2 commits to pyproject • 955040e…b1451bc • 
on Apr 11, 2024

Add test CI (only linting for now)

RalfGpushed 2 commits to pyproject • b622eb9…955040e • 
on Apr 11, 2024

Fix compatibility with Python >= 3.9 (minimal for Keras); Automated r…

RalfGcreated pyproject • b622eb9 • 
on Apr 11, 2024

fix bug

akensertpushed 1 commit to main • 1b20cec…9a88c5d • 
on Apr 10, 2024