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  • SvAnnotProcessor Public

    a tiny pipeline for dealing with SV annotation, typical for repeat class

    Python 1 MIT License Updated Jan 7, 2025

  • CycFilt Public

    tiny tool for xxx reads filtering

    Rust 1 MIT License Updated Dec 11, 2024

  • PWA Public

    Paper work accelerator

    Python MIT License Updated Nov 7, 2024

  • comery.github.io Public

    HTML 1 Updated Oct 17, 2024

  • Bioinformatics-cook Public

    Perl/Python/R scripts for bioinformatics analysis

    Perl 5 8 Updated Oct 9, 2024

  • HIFI-barcode-SE400 Public

    A new approach to access COI barcode using high throughput Single-End 400 bp sequencing

    Python 6 Updated May 31, 2024

  • SJM Public

    slurm job monitoring script

    Python 5 MIT License Updated May 16, 2024

  • Bamsnap-LRS Public

    A modified version of Bamsnap with Long Read Support (LRS)

    Updated Dec 23, 2023

  • chicken-T2T Public

    Forked from lurebgi/chicken-T2T

    Scripts that used in our chicken T2T manuscript.

    Shell MIT License Updated Jul 6, 2023

  • Novel_Sequence Public

    Novel sequence detection pipelines for individual genome from sequencing data or assembly.

    MIT License Updated Jun 2, 2023

  • Data-Visulization Public

    issues for semina "Data Visulization"

    Python 13 2 Updated May 25, 2023

  • Trio_chicken Public

    scripts for paper "Evolutionary analysis of a complete chicken genome"

    Python 1 Updated May 12, 2023

  • TwoAssemblersDance Public

    Ref-based tool that can combine two assembler output to generate best assembly version

    MIT License Updated Jul 29, 2022

  • Nile_rat Public

    scripts for nile rat genome study

    Python 2 Updated Jul 12, 2022

  • TrioGenetics Public

    Updated Jul 1, 2022

  • phaser Public

    Forked from secastel/phaser

    phasing and Allele Specific Expression from RNA-seq

    Python GNU General Public License v3.0 Updated May 11, 2022

  • assembler-components Public

    Forked from GFA-spec/assembler-components

    Components of genome sequence assembly tools

    Shell Updated Mar 30, 2022

  • LINKVIEW Public

    Forked from YangJianshun/LINKVIEW

    DNA序列比对结果 可视化展示工具

    Python Updated Oct 10, 2021

  • ENVer-Workshop-2021 Public

    生物信息学入门的系列课程，包括Linux, shell, Python 编程，建库测序，基因组学，以及系统进化，常用软件使用等内容。

    Roff 19 5 Updated Sep 16, 2021

  • HIFI-barcode-hiseq Public

    A housed python program to analyze NGS data for HIFI-barcode project

    perl python3 gap-filling hifi-barcode
    Python 2 Updated Sep 15, 2021

  • marmoset Public

    Python 8 7 Updated Jun 27, 2021

  • Antsome Public

    A sharing knowledge database for Ants

    Updated Sep 27, 2019

  • For_soptted_hyena_genome Public

    Some customized scripts for paper "A draft genome assembly of spotted hyena, Crocuta crocuta"

    Python 1 1 GNU General Public License v3.0 Updated Jul 9, 2019

  • MitoZ-Hackathon Public

    This is a fork version from MitoZ which is developed by Guanliang Meng, and for a Hackathon activity.

    Updated May 20, 2019

  • MitoZ Public

    Forked from linzhi2013/MitoZ

    MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

    Python GNU General Public License v3.0 Updated Jan 26, 2019

  • HIFI-barcode-pacbio Public

    A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform

    perl barcode pacbio-data
    Perl 1 1 Updated Jan 24, 2019