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pyproject.toml
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[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"
[project]
name = "bioservices"
version = "1.12.0"
description = "Access to Biological Web Services from Python"
authors = [{name="Thomas Cokelaer", email="thomas.cokelaer@pasteur.fr"}]
license = "GPLv3"
readme = "README.rst"
keywords = ["BioServices", "WebServices", "Biology", "ChEBI", "UniChem", "Kegg", "KEGG", "BioModels", "EUtils", "UniProt", "PICR", "ArrayExpress", "MUSCLE", "QuickGO", "PDB", "PSICQUIC", "Blast", "BioMART", "PantherDB", "BioGRID", "MIRIAM", "BioMart", "GeneProf", "ChEMBL", "ChemSpider", "HGNC", "PathwayCommons", "Rhea", "Ensembl"]
classifiers = [
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Education",
"Intended Audience :: End Users/Desktop",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Topic :: Software Development :: Libraries :: Python Modules",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Information Analysis",
]
requires-python = ">=3.8,<4.0"
dependencies = [
"click (>=8.1.8,<9.0.0)",
"appdirs (>=1.4.4,<2.0.0)",
"matplotlib (<4)",
"easydev (>=0.13.3,<0.14.0)",
"tqdm (>=4.67.1,<5.0.0)",
"rich-click (>=1.8.5,<2.0.0)",
"colorlog (>=6.9.0,<7.0.0)",
"beautifulsoup4 (>=4.12.3,<5.0.0)",
"grequests (>=0.7.0,<0.8.0)",
"requests (>=2.32.3,<3.0.0)",
"lxml (>=5.3.0,<6.0.0)",
"requests-cache (>=1.2.1,<2.0.0)",
"suds-community (>=1.2.0,<2.0.0)",
"wrapt (>=1.17.2,<2.0.0)",
"xmltodict (>=0.14.2,<0.15.0)",
"pandas (<2.2)"
]
[project.scripts]
bioservices = "bioservices.main:main"
[project.urls]
Homepage = "https://bioservices.readthedocs.io"
Repository = "https://github.com/cokelaer/bioservices"
Issues = "https://github.com/cokelaer/bioservices/issues"
Documentation = "https://bioesrvices.readthedocs.io"
[tool.poetry.group.dev.dependencies]
pytest = "^8"
pytest-cov = "^4.1.0"
pytest-xdist = "^3.5.0"
pytest-mock = "^3.12.0"
pytest-timeout = "^2.2.0"
pytest-runner = "^6.0.1"
coveralls = "^3.3.1"
flaky = "^3.7.0"
[tool.poetry.group.doc.dependencies]
sphinx = ">3"
sphinx-rtd-theme = "^2.0.0"
sphinx-gallery = "^0.15.0"