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remove left-over from my debugging through container
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bast authored Jan 29, 2025
1 parent 3bc7c17 commit 5e52636
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions content/snakemake.md
Original file line number Diff line number Diff line change
Expand Up @@ -21,18 +21,18 @@ This could be one way to do it:
num_rounds=10

for i in $(seq -w 1 ${num_rounds}); do
./conda.sif python generate_data.py \
python generate_data.py \
--num-samples 2000 \
--training-data data/train_${i}.csv \
--test-data data/test_${i}.csv

./conda.sif python generate_predictions.py \
python generate_predictions.py \
--num-neighbors 7 \
--training-data data/train_${i}.csv \
--test-data data/test_${i}.csv
--predictions results/predictions_${i}.csv

./conda.sif python plot_results.py \
python plot_results.py \
--training-data data/train_${i}.csv \
--predictions results/predictions_${i}.csv \
--output-chart results/chart_${i}.png
Expand All @@ -51,7 +51,7 @@ For the following we will assume that we have the input data available:
num_rounds=10

for i in $(seq -w 1 ${num_rounds}); do
./conda.sif python generate_data.py \
python generate_data.py \
--num-samples 2000 \
--training-data data/train_${i}.csv \
--test-data data/test_${i}.csv
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