Add missing test cases

chrovis · Aug 2, 2024 · c2ea942 · c2ea942
1 parent cd66f85
commit c2ea942
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Showing 2 changed files with 8 additions and 1 deletion.
diff --git a/test/cljam/io/cram/encode/alignment_stats_test.clj b/test/cljam/io/cram/encode/alignment_stats_test.clj
@@ -56,12 +56,15 @@
                  {:ri 0, :start 51, :end 150}
                  {:ri 1, :start 51, :end 150}
                  {:ri 1, :start 151, :end 300}
+                 {:ri 2, :start 51, :end 150}
+                 {:ri 2, :start 200, :end 300}
                  {:ri -1, :start 0, :end 0}
                  {:ri -1, :start 0, :end 0}]]
     (run! (fn [{:keys [ri start end]}]
             (stats/update-span! builder ri start end))
           records)
     (is (= {0 {:start 1, :span 150}
             1 {:start 51, :span 250}
+            2 {:start 51, :span 250}
             -1 {:start 0, :span 1}}
            (stats/build-spans builder)))))
diff --git a/test/cljam/io/cram/encode/record_test.clj b/test/cljam/io/cram/encode/record_test.clj
@@ -75,7 +75,8 @@
                   {:rname "ref", :pos 5, :cigar "2S3M",:seq "CCTGT", :qual "##AAC"}
                   {:rname "ref", :pos 10, :cigar "5M", :seq "GATAA", :qual "CCCFF"}
                   {:rname "ref", :pos 15, :cigar "1M1I1M1D2M", :seq "GAAAG", :qual "EBBFF"}
-                  {:rname "*", :pos 0, :cigar "*", :seq "CTGTG", :qual "AEEEE"}])]
+                  {:rname "*", :pos 0, :cigar "*", :seq "CTGTG", :qual "AEEEE"}
+                  {:rname "*", :pos 10, :cigar "*", :seq "*", :qual "*"}])]
     (record/preprocess-slice-records test-seq-resolver rname->idx subst-mat records)
     (is (= [{:rname "ref", :pos 1, :cigar "5M", :seq "AGAAT", :qual "HFHHH"
              ::record/flag 0x03, ::record/ref-index 0, ::record/end 5
@@ -92,6 +93,9 @@
                                 {:code :deletion, :pos 4, :len 1}]}
             {:rname "*", :pos 0, :cigar "*", :seq "CTGTG", :qual "AEEEE"
              ::record/flag 0x03, ::record/ref-index -1, ::record/end 0
+             ::record/features []}
+            {:rname "*", :pos 10, :cigar "*", :seq "*", :qual "*"
+             ::record/flag 0x0b, ::record/ref-index -1, ::record/end 10
              ::record/features []}]
            (walk/prewalk #(if (.isArray (class %)) (vec %) %)
                          records)))))