From 8edaeadcbfcd2ab2e326531759a9c973474d380b Mon Sep 17 00:00:00 2001 From: Toshiki TAKEUCHI Date: Fri, 25 Apr 2014 13:52:31 +0900 Subject: [PATCH] Rename test-resources' path --- {test/resources => test-resources}/medium.bam | Bin {test/resources => test-resources}/medium.fa | 0 .../medium.fa.fai | 0 .../t_core.pileup | 0 .../resources => test-resources}/t_core.view | 0 {test/resources => test-resources}/test.bam | Bin {test/resources => test-resources}/test.fa | 0 .../resources => test-resources}/test.fa.fai | 0 .../resources => test-resources}/test.gtf.gz | Bin .../test.gtf.gz.tbi | Bin {test/resources => test-resources}/test.sam | 0 .../test.sorted.bam | Bin .../test.sorted.bam.bai | Bin test/cljam/t_cli.clj | 2 +- test/cljam/t_common.clj | 20 +++++++++--------- 15 files changed, 11 insertions(+), 11 deletions(-) rename {test/resources => test-resources}/medium.bam (100%) rename {test/resources => test-resources}/medium.fa (100%) rename {test/resources => test-resources}/medium.fa.fai (100%) rename {test/resources => test-resources}/t_core.pileup (100%) rename {test/resources => test-resources}/t_core.view (100%) rename {test/resources => test-resources}/test.bam (100%) rename {test/resources => test-resources}/test.fa (100%) rename {test/resources => test-resources}/test.fa.fai (100%) rename {test/resources => test-resources}/test.gtf.gz (100%) rename {test/resources => test-resources}/test.gtf.gz.tbi (100%) rename {test/resources => test-resources}/test.sam (100%) rename {test/resources => test-resources}/test.sorted.bam (100%) rename {test/resources => test-resources}/test.sorted.bam.bai (100%) diff --git a/test/resources/medium.bam b/test-resources/medium.bam similarity index 100% rename from test/resources/medium.bam rename to test-resources/medium.bam diff --git a/test/resources/medium.fa b/test-resources/medium.fa similarity index 100% rename from test/resources/medium.fa rename to test-resources/medium.fa diff --git a/test/resources/medium.fa.fai b/test-resources/medium.fa.fai similarity index 100% rename from test/resources/medium.fa.fai rename to test-resources/medium.fa.fai diff --git a/test/resources/t_core.pileup b/test-resources/t_core.pileup similarity index 100% rename from test/resources/t_core.pileup rename to test-resources/t_core.pileup diff --git a/test/resources/t_core.view b/test-resources/t_core.view similarity index 100% rename from test/resources/t_core.view rename to test-resources/t_core.view diff --git a/test/resources/test.bam b/test-resources/test.bam similarity index 100% rename from test/resources/test.bam rename to test-resources/test.bam diff --git a/test/resources/test.fa b/test-resources/test.fa similarity index 100% rename from test/resources/test.fa rename to test-resources/test.fa diff --git a/test/resources/test.fa.fai b/test-resources/test.fa.fai similarity index 100% rename from test/resources/test.fa.fai rename to test-resources/test.fa.fai diff --git a/test/resources/test.gtf.gz b/test-resources/test.gtf.gz similarity index 100% rename from test/resources/test.gtf.gz rename to test-resources/test.gtf.gz diff --git a/test/resources/test.gtf.gz.tbi b/test-resources/test.gtf.gz.tbi similarity index 100% rename from test/resources/test.gtf.gz.tbi rename to test-resources/test.gtf.gz.tbi diff --git a/test/resources/test.sam b/test-resources/test.sam similarity index 100% rename from test/resources/test.sam rename to test-resources/test.sam diff --git a/test/resources/test.sorted.bam b/test-resources/test.sorted.bam similarity index 100% rename from test/resources/test.sorted.bam rename to test-resources/test.sorted.bam diff --git a/test/resources/test.sorted.bam.bai b/test-resources/test.sorted.bam.bai similarity index 100% rename from test/resources/test.sorted.bam.bai rename to test-resources/test.sorted.bam.bai diff --git a/test/cljam/t_cli.clj b/test/cljam/t_cli.clj index 6d564c84..1b8bd20f 100644 --- a/test/cljam/t_cli.clj +++ b/test/cljam/t_cli.clj @@ -69,7 +69,7 @@ (fact "about pileup" ;; NB: "pileup" output format may change in future (maybe) (with-out-file temp-out (cli/pileup [test-sorted-bam-file])) => anything - ;(slurp temp-out) => (slurp "test/resources/t_cli.pileup") + ;(slurp temp-out) => (slurp "test-resources/t_cli.pileup") )) (with-state-changes [(before :facts (do (prepare-cache!) diff --git a/test/cljam/t_common.clj b/test/cljam/t_common.clj index 3a98cc11..f27fe006 100644 --- a/test/cljam/t_common.clj +++ b/test/cljam/t_common.clj @@ -57,33 +57,33 @@ ;; ### SAM files -(def test-sam-file "test/resources/test.sam") +(def test-sam-file "test-resources/test.sam") ;; ### BAM files -(def test-bam-file "test/resources/test.bam") -(def test-sorted-bam-file "test/resources/test.sorted.bam") -(def medium-bam-file "test/resources/medium.bam") +(def test-bam-file "test-resources/test.bam") +(def test-sorted-bam-file "test-resources/test.sorted.bam") +(def medium-bam-file "test-resources/medium.bam") (def large-bam-file (cavia/resource mycavia "large.bam")) ;; ### BAM index files -(def test-bai-file "test/resources/test.sorted.bam.bai") +(def test-bai-file "test-resources/test.sorted.bam.bai") (def test-large-bai-file (cavia/resource mycavia "large.bai")) ;; ### FASTA files -(def test-fa-file "test/resources/test.fa") -(def medium-fa-file "test/resources/medium.fa") +(def test-fa-file "test-resources/test.fa") +(def medium-fa-file "test-resources/medium.fa") ;; ### FASTA index files -(def test-fai-file "test/resources/test.fa.fai") -(def medium-fai-file "test/resources/medium.fa.fai") +(def test-fai-file "test-resources/test.fa.fai") +(def medium-fai-file "test-resources/medium.fa.fai") ;; ### TABIX files -(def test-tabix-file "test/resources/test.gtf.gz.tbi") +(def test-tabix-file "test-resources/test.gtf.gz.tbi") (def test-large-tabix-file (cavia/resource mycavia "large.tbi")) (def test-sam