.pre-commit-config.yaml

default_stages:
  - commit

repos:
  # general file format
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.4.0
    hooks:
      - id: check-yaml
      - id: end-of-file-fixer
      - id: trailing-whitespace

  # markdown formatting
  - repo: https://github.com/executablebooks/mdformat
    rev: 0.7.16
    hooks:
      - id: mdformat
        # Optionally add plugins
        additional_dependencies:
          - mdformat-gfm
          - mdformat-black

  # automatically upgrade python code for newer versions
  - repo: https://github.com/asottile/pyupgrade
    rev: v3.3.1
    hooks:
      - id: pyupgrade
        args: [--py310-plus]

  # remove unused python imports
  - repo: https://github.com/myint/autoflake
    rev: v2.0.0
    hooks:
      - id: autoflake
        args: [ --in-place, --remove-all-unused-imports ]

  # turn relative imports into absolute ones
  - repo: https://github.com/MarcoGorelli/absolufy-imports
    rev: v0.3.1
    hooks:
      - id: absolufy-imports

  # sort python imports
  - repo: https://github.com/pycqa/isort
    rev: 5.12.0
    hooks:
      - id: isort
        name: isort (python)
      - id: isort
        name: isort (cython)
        types: [ cython ]
      - id: isort
        name: isort (pyi)
        types: [ pyi ]

  # format python code
  - repo: https://github.com/psf/black
    rev: 22.12.0
    hooks:
      - id: black
        language_version: python3 # Should be a command that runs python3.6+
        args: [ --line-length=100, -S ]

  # python lint
  - repo: https://github.com/pycqa/pylint
    rev: v2.16.0b1
    hooks:
      - id: pylint

  # type checks
  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v0.991
    hooks:
      - id: mypy
        additional_dependencies: [ numpy==1.23.0, types-all ]
        exclude: .*\.pyi$

  # python style
  - repo: https://github.com/pycqa/flake8
    rev: 6.0.0
    hooks:
      - id: flake8