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Catalina Vallejos edited this page Aug 1, 2017 · 17 revisions

Welcome to the BASiCS wiki!

WARNING: Page under development in preparation for Bioconductor submission. The documentation included in this Wiki relates to the 'BioC' branch of the repository, which is not yet stable. Please ignore this page until this warning has been removed

Summary of what's new to be described here:

(DRAFT BELOW)

  • SummarizedExperiment data class
  • Storage as Rds files
  • New EFDR control for HVG/LVG detection
  • LFC threshold in log2 scale

References: Vallejos et al (2015) PLoS Computational Biology; Vallejos et al (2016) Genome Biology; Eling et al (2018) Cell Systems

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