From 2aae0f148ada7381906895f56d979319994c5b50 Mon Sep 17 00:00:00 2001
From: Joshua Hoskins <jrh4dy@gmail.com>
Date: Tue, 10 Sep 2024 10:01:19 -0400
Subject: [PATCH] Update to toolviper.

---
 .github/workflows/python-testing-linux.yml | 43 +++++++++++++++++
 .github/workflows/python-testing-macos.yml | 41 ++++++++++++++++
 .github/workflows/pythonpublish.yml        | 55 ++++++++++++++++++++++
 pyproject.toml                             |  7 ---
 4 files changed, 139 insertions(+), 7 deletions(-)
 create mode 100644 .github/workflows/python-testing-linux.yml
 create mode 100644 .github/workflows/python-testing-macos.yml
 create mode 100644 .github/workflows/pythonpublish.yml

diff --git a/.github/workflows/python-testing-linux.yml b/.github/workflows/python-testing-linux.yml
new file mode 100644
index 0000000..1efbcad
--- /dev/null
+++ b/.github/workflows/python-testing-linux.yml
@@ -0,0 +1,43 @@
+# This workflow will install Python dependencies, run tests and lint with a single version of Python
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Linux
+
+on:
+  push:
+    paths-ignore:
+      - '**.md'
+      - '**.rst'
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        python-version: ["3.9","3.10","3.11","3.12", "3.13"]
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python 3
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install dependencies with pip
+      run: |
+        python -m pip install --upgrade pip
+        pip install .
+    - name: Test with pytest
+      run: |
+        pytest -v tests/ --html=test-results.html --self-contained-html --cov=viper --no-cov-on-fail --cov-report=html --doctest-modules
+
+    - name: Upload pytest test results and coverage reports
+      uses: actions/upload-artifact@v4
+      with:
+        name: pytest-results-${{ matrix.python-version }}
+        path: |
+          ./test-results.html
+          ./htmlcov
+      # Use always() to always run this step to publish test results when there are test failures
+      if: ${{ always() }}
diff --git a/.github/workflows/python-testing-macos.yml b/.github/workflows/python-testing-macos.yml
new file mode 100644
index 0000000..1d2b6e8
--- /dev/null
+++ b/.github/workflows/python-testing-macos.yml
@@ -0,0 +1,41 @@
+name: MacOS
+
+on:
+  push:
+    branches:
+      - main
+    paths-ignore:
+      - '**.md'
+      - '**.rst'
+
+jobs:
+  build:
+    name: macos (${{ matrix.python-version }}, ${{ matrix.os }})
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -l {0}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["macos-latest"]
+        python-version: ["3.9", "3.10","3.11","3.12", "3.13"]
+    steps:
+      - name: Setup Conda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          auto-activate-base: false
+          activate-environment: xradiotest
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge
+      
+      - uses: actions/checkout@v4
+      
+      - name: Install dependencies with pip
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install .
+          
+      - name: Test with pytest
+        run: pytest
diff --git a/.github/workflows/pythonpublish.yml b/.github/workflows/pythonpublish.yml
new file mode 100644
index 0000000..3359628
--- /dev/null
+++ b/.github/workflows/pythonpublish.yml
@@ -0,0 +1,55 @@
+# This workflows will upload a Python Package for tagged commits
+# For more information see: https://packaging.python.org/en/latest/guides/publishing-package-distribution-releases-using-github-actions-ci-cd-workflows/
+
+name: Publish Python 🐍 distribution 📦 to PyPI and TestPyPI
+
+on: 
+  release:
+    types: [created]
+
+jobs:
+  build:
+    name: Build distribution 📦
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: "3.11"
+    - name: Install pypa/build
+      run: >-
+        python3 -m
+        pip install
+        build
+        --user
+    - name: Build a source distribution
+      run: python3 -m build
+    - name: Store the distribution packages
+      uses: actions/upload-artifact@v4
+      with:
+        name: python-package-distributions
+        path: dist/
+
+  publish-to-pypi:
+    name: >-
+      Publish Python 🐍 distribution 📦 to PyPI
+    if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+    needs:
+    - build
+    runs-on: ubuntu-latest
+    environment:
+      name: release
+      url: https://pypi.org/project/toolviper
+    permissions:
+      id-token: write  # IMPORTANT: mandatory for trusted publishing
+
+    steps:
+    - name: Download all the dists
+      uses: actions/download-artifact@v4
+      with:
+        name: python-package-distributions
+        path: dist/
+    - name: Publish distribution 📦 to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
diff --git a/pyproject.toml b/pyproject.toml
index b87627b..059434d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -11,31 +11,24 @@ readme = "README.md"
 requires-python = ">= 3.9, < 3.13"
 
 dependencies = [
-    'astropy',
     'cerberus',
     'dask',
     'dask_jobqueue',
     'distributed',
-    'matplotlib',
     'numba>=0.57.0',
     'numpy',
     'psutil',
     'ipywidgets',
-    'prettytable',
     'pytest',
     'pytest-cov',
     'pytest-html',
     'rich',
-    'scipy',
     'tqdm',
-    'xarray',
     'zarr',
     'bokeh',
     'jupyterlab',
     'pyarrow',
     'graphviz',
-    'rich',
-    'python_casacore>=3.6.1; sys_platform != "darwin" '
 ]