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Minor fixes for web render #179

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merged 3 commits into from
Apr 3, 2024
Merged

Minor fixes for web render #179

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d18fa59
Escape % in PCA
ailithewing Apr 2, 2024
ce3a0e2
Escape the first percentage
ailithewing Apr 2, 2024
4005cac
Fix caption and update scree plot
alanocallaghan Apr 3, 2024
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2 changes: 1 addition & 1 deletion _episodes_rmd/04-principal-component-analysis.Rmd
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Expand Up @@ -649,7 +649,7 @@ amount of the variation. The proportion of variance explained should sum to one.
>
> > ## Solution
> >
> > ```{r scree-ex, fig.cap="A scree plot of the gene expression data.", fig.alt="A bar and line plot showing the variance explained by principal components (PCs) of gene expression data. Blue bars depict the variance explained by each PC, while a red line depicts the cumulative variance explained by these PCs. The first principal component explains roughly 30\% of the variance, while succeeding PCs explain less than 10%."}
> > ```{r scree-ex, fig.cap="A scree plot of the gene expression data.", fig.alt="A bar and line plot showing the variance explained by principal components (PCs) of gene expression data. Blue bars depict the variance explained by each PC, while a red line depicts the cumulative variance explained by these PCs. The first principal component explains roughly 30\% of the variance, while succeeding PCs explain less than 10\\%."}
> > pc <- pca(mat, metadata = metadata)
> > # Add line to scree plot to visualise the elbow
> > screeplot(pc, axisLabSize = 5, titleLabSize = 8, drawCumulativeSumLine = FALSE,
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