From fd702c28e8596531331a70caec409b4eb20993be Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 23 Apr 2024 01:05:57 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 984260bc900f7da07bcc10ceeba1e9342423b391
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-04-02 09:26:52 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 402ffe81435bc299829102716af6f0611dceccb0
Branch  : main
Author  : Kevin Rue-Albrecht <kevinrue67@gmail.com>
Time    : 2024-04-02 09:24:53 +0000
Message : Rescue some overdue PRs (#80)

* PR #64

* PR #65

* PR #66
---
 01-setup.html                                   |  2 +-
 02-introduction-to-bioconductor.html            |  6 +++---
 03-installing-bioconductor.html                 |  2 +-
 04-getting-help.html                            |  2 +-
 05-s4.html                                      |  2 +-
 06-biological-sequences.html                    |  2 +-
 07-genomic-ranges.html                          |  6 +++---
 404.html                                        |  4 ++--
 CODE_OF_CONDUCT.html                            |  2 +-
 LICENSE.html                                    |  2 +-
 aio.html                                        | 12 ++++++------
 discuss.html                                    |  2 +-
 images.html                                     |  4 ++--
 index.html                                      |  4 ++--
 instructor-notes.html                           |  4 ++--
 instructor/01-setup.html                        |  2 +-
 instructor/02-introduction-to-bioconductor.html |  6 +++---
 instructor/03-installing-bioconductor.html      |  2 +-
 instructor/04-getting-help.html                 |  2 +-
 instructor/05-s4.html                           |  2 +-
 instructor/06-biological-sequences.html         |  2 +-
 instructor/07-genomic-ranges.html               |  6 +++---
 instructor/404.html                             |  4 ++--
 instructor/CODE_OF_CONDUCT.html                 |  2 +-
 instructor/LICENSE.html                         |  2 +-
 instructor/aio.html                             | 12 ++++++------
 instructor/discuss.html                         |  2 +-
 instructor/images.html                          |  4 ++--
 instructor/index.html                           |  4 ++--
 instructor/instructor-notes.html                |  4 ++--
 instructor/key-points.html                      |  4 ++--
 instructor/profiles.html                        |  4 ++--
 instructor/reference.html                       |  2 +-
 key-points.html                                 |  4 ++--
 pkgdown.yml                                     |  4 ++--
 profiles.html                                   |  4 ++--
 reference.html                                  |  2 +-
 37 files changed, 68 insertions(+), 68 deletions(-)

diff --git a/01-setup.html b/01-setup.html
index c095f0d7..741fb6c0 100644
--- a/01-setup.html
+++ b/01-setup.html
@@ -461,7 +461,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/01-setup.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/02-introduction-to-bioconductor.html b/02-introduction-to-bioconductor.html
index f19f4442..fbd70e5b 100644
--- a/02-introduction-to-bioconductor.html
+++ b/02-introduction-to-bioconductor.html
@@ -504,7 +504,7 @@ <h3 class="callout-title">Challenge: The Bioconductor website<a class="anchor" a
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The following solution includes numbers that were valid at the time
 of writing (Bioconductor release 3.13); numbers will inevitably be
@@ -575,7 +575,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>
 <code>RNAseq</code>, <code>ChIPSeq</code>, <code>Epigenetics</code>,
@@ -860,7 +860,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/02-introduction-to-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/03-installing-bioconductor.html b/03-installing-bioconductor.html
index 2f0d9199..1754302e 100644
--- a/03-installing-bioconductor.html
+++ b/03-installing-bioconductor.html
@@ -840,7 +840,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/03-installing-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/04-getting-help.html b/04-getting-help.html
index 3ef14430..823d3361 100644
--- a/04-getting-help.html
+++ b/04-getting-help.html
@@ -699,7 +699,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/04-getting-help.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/05-s4.html b/05-s4.html
index 351c7641..443255c2 100644
--- a/05-s4.html
+++ b/05-s4.html
@@ -1146,7 +1146,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/05-s4.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/06-biological-sequences.html b/06-biological-sequences.html
index 04109c64..4314e9fe 100644
--- a/06-biological-sequences.html
+++ b/06-biological-sequences.html
@@ -956,7 +956,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/06-biological-sequences.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/07-genomic-ranges.html b/07-genomic-ranges.html
index 3073f29a..b836c8e2 100644
--- a/07-genomic-ranges.html
+++ b/07-genomic-ranges.html
@@ -540,7 +540,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1236,7 +1236,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1431,7 +1431,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/07-genomic-ranges.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index d2ff53fa..74fbf9c0 100644
--- a/404.html
+++ b/404.html
@@ -333,8 +333,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/404.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/404.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index d9e5c600..eb3b8f8a 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -351,7 +351,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/CODE_OF_CONDUCT.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index f0c0a70c..ebd305d5 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -403,7 +403,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/LICENSE.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 09a5bdd4..8b915101 100644
--- a/aio.html
+++ b/aio.html
@@ -677,7 +677,7 @@ <h3 class="callout-title">Challenge: The Bioconductor website<a class="anchor" a
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The following solution includes numbers that were valid at the time
 of writing (Bioconductor release 3.13); numbers will inevitably be
@@ -755,7 +755,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>
@@ -3592,7 +3592,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4299,7 +4299,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4486,8 +4486,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/bioc-project/aio.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/aio.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/discuss.html b/discuss.html
index 3c8ea791..ff63b709 100644
--- a/discuss.html
+++ b/discuss.html
@@ -501,7 +501,7 @@ <h3 id="transition-between-devel-and-release---the-release-process">Transition b
   "identifier": "https://carpentries-incubator.github.io/bioc-project/discuss.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index a2303b80..3dec4a53 100644
--- a/images.html
+++ b/images.html
@@ -413,8 +413,8 @@ <h3 id="07-genomic-ranges-figure-3">Figure 3</h3>
   "url": "https://carpentries-incubator.github.io/bioc-project/images.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/images.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index 1afee171..7cc69b5c 100644
--- a/index.html
+++ b/index.html
@@ -365,8 +365,8 @@ <h3 class="callout-title">Prerequisites<a class="anchor" aria-label="anchor" hre
   "url": "https://carpentries-incubator.github.io/bioc-project/index.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/index.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index e3f632f9..960aa174 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -386,8 +386,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor-notes.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/01-setup.html b/instructor/01-setup.html
index 4c451745..c959532b 100644
--- a/instructor/01-setup.html
+++ b/instructor/01-setup.html
@@ -463,7 +463,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/01-setup.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/02-introduction-to-bioconductor.html b/instructor/02-introduction-to-bioconductor.html
index 720a2b31..2e45bd12 100644
--- a/instructor/02-introduction-to-bioconductor.html
+++ b/instructor/02-introduction-to-bioconductor.html
@@ -506,7 +506,7 @@ <h3 class="callout-title">Challenge: The Bioconductor website<a class="anchor" a
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The following solution includes numbers that were valid at the time
 of writing (Bioconductor release 3.13); numbers will inevitably be
@@ -577,7 +577,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>
 <code>RNAseq</code>, <code>ChIPSeq</code>, <code>Epigenetics</code>,
@@ -862,7 +862,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/02-introduction-to-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/03-installing-bioconductor.html b/instructor/03-installing-bioconductor.html
index 9d48c89e..64123acd 100644
--- a/instructor/03-installing-bioconductor.html
+++ b/instructor/03-installing-bioconductor.html
@@ -842,7 +842,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/03-installing-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/04-getting-help.html b/instructor/04-getting-help.html
index 97ff9e21..288b362d 100644
--- a/instructor/04-getting-help.html
+++ b/instructor/04-getting-help.html
@@ -701,7 +701,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/04-getting-help.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/05-s4.html b/instructor/05-s4.html
index 326000bd..9142d868 100644
--- a/instructor/05-s4.html
+++ b/instructor/05-s4.html
@@ -1148,7 +1148,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/05-s4.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/06-biological-sequences.html b/instructor/06-biological-sequences.html
index fd70e4b9..7b9f1b44 100644
--- a/instructor/06-biological-sequences.html
+++ b/instructor/06-biological-sequences.html
@@ -958,7 +958,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/06-biological-sequences.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/07-genomic-ranges.html b/instructor/07-genomic-ranges.html
index b2075f53..335f73b5 100644
--- a/instructor/07-genomic-ranges.html
+++ b/instructor/07-genomic-ranges.html
@@ -542,7 +542,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1238,7 +1238,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1433,7 +1433,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/07-genomic-ranges.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index ee6df2ff..1fa6045f 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -333,8 +333,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/404.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/404.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 43b750e6..f3c774f9 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -353,7 +353,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 21418a8b..7d6c8208 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -405,7 +405,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/LICENSE.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 81b00fc6..83e829fa 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -681,7 +681,7 @@ <h3 class="callout-title">Challenge: The Bioconductor website<a class="anchor" a
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The following solution includes numbers that were valid at the time
 of writing (Bioconductor release 3.13); numbers will inevitably be
@@ -759,7 +759,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>
@@ -3601,7 +3601,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4308,7 +4308,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4495,8 +4495,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/aio.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/aio.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/discuss.html b/instructor/discuss.html
index 19ab4055..ee2d7f6a 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -503,7 +503,7 @@ <h3 id="transition-between-devel-and-release---the-release-process">Transition b
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/discuss.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 6e7aeea1..b8746f6d 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -415,8 +415,8 @@ <h3 id="07-genomic-ranges-figure-3">Figure 3</h3>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/images.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/images.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index d7143864..c6d2ca58 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -461,8 +461,8 @@ <h3 class="callout-title">Prerequisites<a class="anchor" aria-label="anchor" hre
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/index.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/index.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 70409576..2cc063c8 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -395,8 +395,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/instructor-notes.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index 1ac1e935..ce94faea 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -459,8 +459,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 1c6a309a..6b78bdb0 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -302,8 +302,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/profiles.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index 6df9c1ed..80fbf439 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -432,7 +432,7 @@ <h1></h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/reference.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index 9b2a96db..fd7e207e 100644
--- a/key-points.html
+++ b/key-points.html
@@ -457,8 +457,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/bioc-project/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index 47a7aced..0044e681 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -1,6 +1,6 @@
 pandoc: 3.1.11
-pkgdown: 2.0.8
+pkgdown: 2.0.9
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-04-16T01:04Z
+last_built: 2024-04-23T01:05Z
 
diff --git a/profiles.html b/profiles.html
index 2786dc8e..2d4b9331 100644
--- a/profiles.html
+++ b/profiles.html
@@ -302,8 +302,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/profiles.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-04-16",
-  "datePublished": "2024-04-16"
+  "dateModified": "2024-04-23",
+  "datePublished": "2024-04-23"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 502fe89f..3e079389 100644
--- a/reference.html
+++ b/reference.html
@@ -430,7 +430,7 @@ <h1></h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/reference.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2024-04-02",
-  "datePublished": "2024-04-16"
+  "datePublished": "2024-04-23"
 }
 
   </script><script>