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TODO.txt
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finish and test method for sampling generated files match existing files for all constant elements
purge usernames/passwords from code before git commit
clean up code in order to only PR targeted and interpretable changes
add pip install roiextractors==0.5.4, neuroconv==0.2.4, tifffile==2023.7.10, opencv-python-headless==4.8.1.78 to image
set pip install pynwb==2.5.0
relaunch pod with new image
delete generated files and regenerate from public datajoint instance
test that regenerated files match existing files for all constant elements
tag repository version
add a column to RoiResponseSeries table for each plane including unit_id (with nans for non-neuron ROIs)
in https://github.com/catalystneuro/MICrONS-to-nwb/blob/main/src/microns_to_nwb/tools/ophys/ophys.py , in the function add_plane_segmentation
add the deconvolved unit activity as a RoiResponseSeries object (processing->ophys, data_interfaces->response series) that has its name changed to ‘RoiDeconvolvedSeries’
in https://github.com/catalystneuro/MICrONS-to-nwb/blob/main/src/microns_to_nwb/tools/ophys/ophys.py , in the function add_roi_response_series.
tag repository version
email catalyst neuro to ask about preferences in DANDI versioning and in their github fork PR (if any)
update DANDI accordingly
PR github to their fork accordingly