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Welcome to the GitHub repository for [*Inferring selection effects in SARS-CoV-2 with Bayesian Viral Allele Selection*](https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010540). The results from our main analysis are available in [paper](paper/). More recent inference results are also available: [08.10.22](paper/08.10.22/), [09.19.22](paper/09.19.22/), [05.15.23](paper/05.15.23/), [06.13.23](paper/06.13.23/), [06.26.23](paper/06.26.23/), [09.04.23](paper/09.04.23), [09.18.23](paper/09.18.23), [10.30.23](paper/10.30.23), [11.13.23](paper/11.13.23), [11.27.23](paper/11.27.23), [12.11.23](paper/12.11.23), [01.01.24](paper/01.04.24), [01.22.24](paper/01.22.24), [02.05.24](paper/02.05.24), [02.22.24](paper/02.22.24), [03.04.24](paper/03.04.24), [03.22.24](paper/03.22.24), [04.04.24](paper/04.04.24), and [05.27.24](paper/05.27.24). Thanks to Benjamin Kotzen ([@bkotzen](https://www.github.com/bkotzen)) for help generating these more recent results!
Welcome to the GitHub repository for [*Inferring selection effects in SARS-CoV-2 with Bayesian Viral Allele Selection*](https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010540). The results from our main analysis are available in [paper](paper/). More recent inference results are also available: [08.10.22](paper/08.10.22/), [09.19.22](paper/09.19.22/), [05.15.23](paper/05.15.23/), [06.13.23](paper/06.13.23/), [06.26.23](paper/06.26.23/), [09.04.23](paper/09.04.23), [09.18.23](paper/09.18.23), [10.30.23](paper/10.30.23), [11.13.23](paper/11.13.23), [11.27.23](paper/11.27.23), [12.11.23](paper/12.11.23), [01.01.24](paper/01.04.24), [01.22.24](paper/01.22.24), [02.05.24](paper/02.05.24), [02.22.24](paper/02.22.24), [03.04.24](paper/03.04.24), [03.22.24](paper/03.22.24), [04.04.24](paper/04.04.24), [05.27.24](paper/05.27.24), and [06.24.24](paper/06.24.24). Thanks to Benjamin Kotzen ([@bkotzen](https://www.github.com/bkotzen)) for help generating these more recent results!
