diff --git a/.DS_Store b/.DS_Store
new file mode 100644
index 0000000..3bb2997
Binary files /dev/null and b/.DS_Store differ
diff --git a/First_notebook.ipynb b/First_notebook.ipynb
index 8fb0cf2..70484b6 100644
--- a/First_notebook.ipynb
+++ b/First_notebook.ipynb
@@ -12,7 +12,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 25,
"id": "7926639c-e08e-4d6a-ba50-3449562336a8",
"metadata": {
"tags": []
@@ -25,68 +25,529 @@
},
{
"cell_type": "code",
- "execution_count": null,
- "id": "d93e136d-9159-4318-b2df-31f0ccdafa0f",
+ "execution_count": 26,
+ "id": "d87b6e11-b5c5-4531-9496-137bcbe4580d",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "fv = pd.read_csv(\"showable_standard.csv\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 27,
+ "id": "5420d5a5-10a2-43d6-85d8-8e2963629fc4",
"metadata": {
"tags": []
},
- "outputs": [],
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "
\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
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+ " run_id | \n",
+ " age | \n",
+ " sex | \n",
+ " site | \n",
+ " gm_vol | \n",
+ " wm_vol | \n",
+ " csf_vol | \n",
+ " gm_icv_ratio | \n",
+ " ... | \n",
+ " cov_wm_pvc0 | \n",
+ " cov_wm_pvc2 | \n",
+ " cov_aca_pvc0 | \n",
+ " cov_mca_pvc0 | \n",
+ " cov_pca_pvc0 | \n",
+ " cov_aca_pvc2 | \n",
+ " cov_mca_pvc2 | \n",
+ " cov_pca_pvc2 | \n",
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\n",
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+ "10 0.472732 0.424353 0.414365 ... 1.1234 1.9876 \n",
+ "11 0.472732 0.424353 0.414365 ... 1.1234 1.9876 \n",
+ "\n",
+ " cov_aca_pvc0 cov_mca_pvc0 cov_pca_pvc0 cov_aca_pvc2 cov_mca_pvc2 \\\n",
+ "9 1.1111 1.1111 1.1111 1.1111 1.1111 \n",
+ "10 1.1111 1.1111 1.1111 1.1111 1.1111 \n",
+ "11 1.1111 1.1111 1.1111 1.1111 1.1111 \n",
+ "\n",
+ " cov_pca_pvc2 Additional_1 Additional_2 \n",
+ "9 1.234 1.234 1.1242 \n",
+ "10 1.234 1.234 1.1242 \n",
+ "11 1.234 1.234 1.1242 \n",
+ "\n",
+ "[3 rows x 35 columns]"
+ ]
+ },
+ "execution_count": 27,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
"source": [
- "np?"
+ "fv.tail(3)"
]
},
{
"cell_type": "code",
- "execution_count": null,
- "id": "9450f6e2-0c63-4ce7-b62f-8c480cc6362e",
+ "execution_count": 28,
+ "id": "679f9426-460a-47fb-8bcf-28f297d477a3",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
- "np.array?"
+ "female_fv = fv[fv.sex=='F']"
]
},
{
"cell_type": "code",
- "execution_count": null,
- "id": "df942d4b-fc2f-4f98-89dc-1886a3074067",
+ "execution_count": 29,
+ "id": "57c33f72-eb1d-4c21-a97a-a89ee96abc05",
"metadata": {
"tags": []
},
- "outputs": [],
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
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\n",
+ " \n",
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+ " gm_vol | \n",
+ " wm_vol | \n",
+ " csf_vol | \n",
+ " gm_icv_ratio | \n",
+ " gmwm_icv_ratio | \n",
+ " wmh_vol | \n",
+ " wmh_count | \n",
+ " cbf_gm_pvc0 | \n",
+ " ... | \n",
+ " cov_wm_pvc0 | \n",
+ " cov_wm_pvc2 | \n",
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+ " cov_mca_pvc0 | \n",
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+ " cov_aca_pvc2 | \n",
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+ " cov_pca_pvc2 | \n",
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+ " 62.939183 | \n",
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\n",
+ " \n",
+ " std | \n",
+ " 19.291983 | \n",
+ " 0.983192 | \n",
+ " 408.204533 | \n",
+ " 0.000000 | \n",
+ " 0.000000 | \n",
+ " 6.080942e-17 | \n",
+ " 0.0000 | \n",
+ " 0.00 | \n",
+ " 0.0 | \n",
+ " 2.432377e-16 | \n",
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+ " 0.0000 | \n",
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+ " 2.432377e-16 | \n",
+ " 2.432377e-16 | \n",
+ " 2.432377e-16 | \n",
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+ " 0.000 | \n",
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\n",
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\n",
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+ " 59.186580 | \n",
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+ " 2.23 | \n",
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+ " 1.111100e+00 | \n",
+ " ... | \n",
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+ " 1.234 | \n",
+ " 1.234 | \n",
+ " 1.1242 | \n",
+ "
\n",
+ " \n",
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+ " 65.607715 | \n",
+ " 1.500000 | \n",
+ " 0.673878 | \n",
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+ " 0.424353 | \n",
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+ " 3.0 | \n",
+ " 1.111100e+00 | \n",
+ " ... | \n",
+ " 1.1234 | \n",
+ " 1.987600e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.234 | \n",
+ " 1.234 | \n",
+ " 1.1242 | \n",
+ "
\n",
+ " \n",
+ " 75% | \n",
+ " 70.524658 | \n",
+ " 2.750000 | \n",
+ " 0.731678 | \n",
+ " 0.472732 | \n",
+ " 0.424353 | \n",
+ " 4.143650e-01 | \n",
+ " 1.1242 | \n",
+ " 2.23 | \n",
+ " 3.0 | \n",
+ " 1.111100e+00 | \n",
+ " ... | \n",
+ " 1.1234 | \n",
+ " 1.987600e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
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+ " 1.234 | \n",
+ " 1.234 | \n",
+ " 1.1242 | \n",
+ "
\n",
+ " \n",
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+ " 87.765430 | \n",
+ " 3.000000 | \n",
+ " 1000.570384 | \n",
+ " 0.472732 | \n",
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+ " 4.143650e-01 | \n",
+ " 1.1242 | \n",
+ " 2.23 | \n",
+ " 3.0 | \n",
+ " 1.111100e+00 | \n",
+ " ... | \n",
+ " 1.1234 | \n",
+ " 1.987600e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.111100e+00 | \n",
+ " 1.234 | \n",
+ " 1.234 | \n",
+ " 1.1242 | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "
8 rows × 31 columns
\n",
+ "
"
+ ],
+ "text/plain": [
+ " age site gm_vol wm_vol csf_vol gm_icv_ratio \\\n",
+ "count 6.000000 6.000000 6.000000 6.000000 6.000000 6.000000e+00 \n",
+ "mean 62.939183 1.833333 167.326373 0.472732 0.424353 4.143650e-01 \n",
+ "std 19.291983 0.983192 408.204533 0.000000 0.000000 6.080942e-17 \n",
+ "min 29.444400 1.000000 0.644794 0.472732 0.424353 4.143650e-01 \n",
+ "25% 59.186580 1.000000 0.651740 0.472732 0.424353 4.143650e-01 \n",
+ "50% 65.607715 1.500000 0.673878 0.472732 0.424353 4.143650e-01 \n",
+ "75% 70.524658 2.750000 0.731678 0.472732 0.424353 4.143650e-01 \n",
+ "max 87.765430 3.000000 1000.570384 0.472732 0.424353 4.143650e-01 \n",
+ "\n",
+ " gmwm_icv_ratio wmh_vol wmh_count cbf_gm_pvc0 ... cov_wm_pvc0 \\\n",
+ "count 6.0000 6.00 6.0 6.000000e+00 ... 6.0000 \n",
+ "mean 1.1242 2.23 3.0 1.111100e+00 ... 1.1234 \n",
+ "std 0.0000 0.00 0.0 2.432377e-16 ... 0.0000 \n",
+ "min 1.1242 2.23 3.0 1.111100e+00 ... 1.1234 \n",
+ "25% 1.1242 2.23 3.0 1.111100e+00 ... 1.1234 \n",
+ "50% 1.1242 2.23 3.0 1.111100e+00 ... 1.1234 \n",
+ "75% 1.1242 2.23 3.0 1.111100e+00 ... 1.1234 \n",
+ "max 1.1242 2.23 3.0 1.111100e+00 ... 1.1234 \n",
+ "\n",
+ " cov_wm_pvc2 cov_aca_pvc0 cov_mca_pvc0 cov_pca_pvc0 cov_aca_pvc2 \\\n",
+ "count 6.000000e+00 6.000000e+00 6.000000e+00 6.000000e+00 6.000000e+00 \n",
+ "mean 1.987600e+00 1.111100e+00 1.111100e+00 1.111100e+00 1.111100e+00 \n",
+ "std 2.432377e-16 2.432377e-16 2.432377e-16 2.432377e-16 2.432377e-16 \n",
+ "min 1.987600e+00 1.111100e+00 1.111100e+00 1.111100e+00 1.111100e+00 \n",
+ "25% 1.987600e+00 1.111100e+00 1.111100e+00 1.111100e+00 1.111100e+00 \n",
+ "50% 1.987600e+00 1.111100e+00 1.111100e+00 1.111100e+00 1.111100e+00 \n",
+ "75% 1.987600e+00 1.111100e+00 1.111100e+00 1.111100e+00 1.111100e+00 \n",
+ "max 1.987600e+00 1.111100e+00 1.111100e+00 1.111100e+00 1.111100e+00 \n",
+ "\n",
+ " cov_mca_pvc2 cov_pca_pvc2 Additional_1 Additional_2 \n",
+ "count 6.000000e+00 6.000 6.000 6.0000 \n",
+ "mean 1.111100e+00 1.234 1.234 1.1242 \n",
+ "std 2.432377e-16 0.000 0.000 0.0000 \n",
+ "min 1.111100e+00 1.234 1.234 1.1242 \n",
+ "25% 1.111100e+00 1.234 1.234 1.1242 \n",
+ "50% 1.111100e+00 1.234 1.234 1.1242 \n",
+ "75% 1.111100e+00 1.234 1.234 1.1242 \n",
+ "max 1.111100e+00 1.234 1.234 1.1242 \n",
+ "\n",
+ "[8 rows x 31 columns]"
+ ]
+ },
+ "execution_count": 29,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
"source": [
- "numpy?"
+ "female_fv.describe()"
]
},
{
"cell_type": "code",
- "execution_count": null,
- "id": "3ab6f1e1-f524-463a-8cd8-1efd65ed9c04",
+ "execution_count": 30,
+ "id": "02657e2c-97f4-42b5-a8c0-362979a1d407",
"metadata": {
"tags": []
},
"outputs": [],
"source": [
- "import numpy\n"
+ "male_fv = fv[fv.sex=='M']"
]
},
{
"cell_type": "code",
- "execution_count": null,
- "id": "7e4ded80-dd56-48ab-9134-5eb298adcdfd",
+ "execution_count": 31,
+ "id": "604e37af-41bc-4b5c-b719-fcf81f6e7ffe",
"metadata": {
"tags": []
},
- "outputs": [],
+ "outputs": [
+ {
+ "ename": "SyntaxError",
+ "evalue": "invalid syntax (1368741220.py, line 1)",
+ "output_type": "error",
+ "traceback": [
+ "\u001b[0;36m Cell \u001b[0;32mIn[31], line 1\u001b[0;36m\u001b[0m\n\u001b[0;31m male_fv.describe().age[]\u001b[0m\n\u001b[0m ^\u001b[0m\n\u001b[0;31mSyntaxError\u001b[0m\u001b[0;31m:\u001b[0m invalid syntax\n"
+ ]
+ }
+ ],
"source": [
- "numpy?\n"
+ "male_fv.describe().age[]"
]
},
{
"cell_type": "code",
"execution_count": null,
- "id": "d87b6e11-b5c5-4531-9496-137bcbe4580d",
+ "id": "86373c0a-20ea-4a0e-b314-374d3aa68b85",
"metadata": {},
"outputs": [],
"source": []
@@ -109,7 +570,10 @@
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.8"
- }
+ },
+ "toc-autonumbering": true,
+ "toc-showcode": false,
+ "toc-showmarkdowntxt": true
},
"nbformat": 4,
"nbformat_minor": 5
diff --git a/Untitled.ipynb b/Untitled.ipynb
new file mode 100644
index 0000000..78d7e6c
--- /dev/null
+++ b/Untitled.ipynb
@@ -0,0 +1,33 @@
+{
+ "cells": [
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "1ef8af2d-1b96-4ee4-b2e4-d271b0ebd526",
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.11.8"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/trainer1.ipynb b/trainer1.ipynb
index d0477de..369d414 100644
--- a/trainer1.ipynb
+++ b/trainer1.ipynb
@@ -509,7 +509,7 @@
},
"outputs": [],
"source": [
- "foundation.csv_my_excel(\"example_excel.xlsx\", \"row_key\")"
+ "dataframe = foundation.csv_my_excel(\"example_excel.xlsx\", \"row_key\")"
]
},
{
@@ -518,6 +518,28 @@
"id": "e0f6d633-f2ca-4208-a005-0fe075ceec1b",
"metadata": {},
"outputs": [],
+ "source": [
+ "dataframe"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "11a520e0-1296-40ab-bf85-95b82a16851e",
+ "metadata": {
+ "tags": []
+ },
+ "outputs": [],
+ "source": [
+ "dataframe.to_csv (\"dataset1.csv\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "13cebb86-0a88-45e3-a0b9-6af7f980df95",
+ "metadata": {},
+ "outputs": [],
"source": []
}
],