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The only time I have ever gotten an expression to work is when i do something like "normals.alts != 0" or "tumors.alts != 0"
The variants were decomposed at multiallelic sites using bcftools. Here is the console output:
I am having difficulty getting slivar expressions to show up when using a VCF generated by GATK Mutect2. The command I am using:
The only time I have ever gotten an expression to work is when i do something like "normals.alts != 0" or "tumors.alts != 0"

The variants were decomposed at multiallelic sites using bcftools. Here is the console output:
The group file and sample vcf are attached:
test.txt
git_sample.txt
Thank you for your time.
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