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CL_AllTestsJack002.m
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function [] = CL_HeadWing_Figure(root)
%%
clc
clear
%% CL_HeadWing_Figure:
% INPUTS:
% root : directory where .mat files are located
% OUTPUTS:
% -
%
root = '/Volumes/HD_1000GB/JF';
% Select files
[D,I,N,U,T,FILES,PATH,~] = GetFileData(root,[],false,'Fly','Trial','HGain','WGain');
if ~iscell(U.HGain)
U.HGain = {U.HGain};
end
if ~iscell(U.WGain)
U.WGain = {U.WGain};
end
%%
% **CREATE VECTOR STRENGTH TABLES**
newvars = zeros(size(I,1),4);
AddTableVars = splitvars((table(zeros(size(I,1),8))));
AddTableVars.Properties.VariableNames = {'zPat', 'pPat','zH','pH','zW','pW','zErr','pErr'};
stats = [I AddTableVars];
% Get Data
TIME = cell(N.Fly,1);
HEAD.Pos = cell(N.Fly,1);
WING.Pos = cell(N.Fly,1);
PAT.XPos = cell(N.Fly,1);
HEAD.All.Pos = cell(N.WGain,N.HGain);
WING.All.Pos = cell(N.WGain,N.HGain);
PAT.All.XPos = cell(N.WGain,N.HGain);
for kk = 1:N.Fly % fly
for ww = 1:N.WGain % wing gain
for hh = 1:N.HGain % head gain
TIME {kk,1}{ww,hh} = [];
HEAD.Pos{kk,1}{ww,hh} = [];
WING.Pos{kk,1}{ww,hh} = [];
PAT.XPos{kk,1}{ww,hh} = [];
end
end
end
fly = [];
fly.Fc = 20;
span = 20:1:2000;
for kk = 1:N.file % all trials
filename = fullfile(PATH,FILES{kk});
load(filename,'FlyState','AI','rawTime','VidTime') % load in fly kinematics & arena voltages
if exist('VidTime','var')==1
vrange = 5;
center =89;
fly.time = VidTime;
elseif exist('rawTime','var')==1
center = 41;
vrange = 10;
fly.time = rawTime;
end
pat.time = AI.Time;
pat.xpos = (round((AI{:,2})*(96/vrange)));
pat.xpos = pat.xpos - center;
% pat.xpos(pat.xpos<0) = pat.xpos(pat.xpos<(center/2)) + (96); %look at this!!!!
pat.xpos = deg2rad(3.75*pat.xpos);
fly.Ts = mean(diff(fly.time));
fly.Fs = 1/fly.Ts;
[fly.b,fly.a] = butter(2,fly.Fc/(fly.Fs/2),'low');
fly.head = deg2rad(filtfilt(fly.b,fly.a,FlyState{:,2}));
fly.lwing = hampel(1:length(FlyState{:,3}),FlyState{:,3});
fly.rwing = hampel(1:length(FlyState{:,4}),FlyState{:,4});
fly.lwing = hampel(1:length(fly.lwing),fly.lwing);
fly.rwing = hampel(1:length(fly.rwing),fly.rwing);
fly.wba = fly.lwing - fly.rwing;
fly.wba = deg2rad(filtfilt(fly.b,fly.a,fly.wba));
fly.time = fly.time (span);
fly.head = fly.head (span);
fly.wba = fly.wba (span);
pat.xpos = pat.xpos (span);
Err = pat.xpos - fly.head;
[stats.pPat(kk),stats.zPat(kk)] = circ_rtest(pat.xpos);
[stats.pH(kk),stats.zH(kk)] = circ_rtest(fly.head);
[stats.pW(kk),stats.zW(kk)] = circ_rtest(fly.wba);
[stats.pErr(kk),stats.zErr(kk)] = circ_rtest(Err);
TIME {I.Fly(kk)}{I.WGain(kk),I.HGain(kk)}(:,end+1) = fly.time;
HEAD.Pos {I.Fly(kk)}{I.WGain(kk),I.HGain(kk)}(:,end+1) = fly.head;
WING.Pos {I.Fly(kk)}{I.WGain(kk),I.HGain(kk)}(:,end+1) = fly.wba;
PAT.XPos {I.Fly(kk)}{I.WGain(kk),I.HGain(kk)}(:,end+1) = pat.xpos;
HEAD.All.Pos {I.WGain(kk),I.HGain(kk)}(:,end+1) = fly.head;
WING.All.Pos {I.WGain(kk),I.HGain(kk)}(:,end+1) = fly.wba;
PAT.All.XPos {I.WGain(kk),I.HGain(kk)}(:,end+1) = pat.xpos;
%**UNCOMMENT TO PLOT ONE TRIAL AT A TIME**
% clf
% cla
% hold on
% % plot(rad2deg(FlySt ate{:,4}))
% % plot((FlyState{:,3}),'b')
% plot(fly.lwing,'r')
% disp(FILES{kk})
% pause
% cla
% clc
end
%% Histogram of PATTERN Position ALL FLIES %%
fig(1) = figure (1);
clf;
hold on
set(fig,'Color','w','Name','Histogram of Pattern Position','Position',[0 0 N.WGain*300 N.HGain*200])
movegui(gcf,'center')
ax = gobjects(N.HGain,N.WGain);
vector = 1:96;
pp = 1;
for ww = 1:N.WGain
for hh = 1:N.HGain
ax(hh,ww) = subplot(N.HGain,N.WGain,pp); hold on
if any(pp==(1:N.WGain))
title(['Wing Gain = ' num2str(U.WGain{1}(ww))],'FontSize',12,'fontweight','bold')
end
if ((pp-1)/N.WGain) == floor((pp-1)/N.WGain)
ylabel(['Head Gain = ' num2str(U.HGain{1}(hh))],...
'FontSize',13,'fontweight','bold')
else
% yticklabels('')
end
if any(pp==(N.WGain*N.HGain-N.WGain+1):(N.WGain*N.HGain))
xlabel(['Pattern Position(' char(176) ')'],'FontSize',12,'fontweight','bold')
else
% xticklabels('')
end
pos = PAT.All.XPos{ww,hh};
histogram(pos,vector,'facecolor','k','Normalization','pdf');
pp = pp + 1;
end
end
% set(ax,'XLim',[1 96])
linkaxes(ax,'xy')
%% Histogram of WING Position ALL FLIES %%
fig(1) = figure (1) ; clf ; hold on
set(fig,'Color','w','Name','Delta WBA','Position',[0 0 N.WGain*300 N.HGain*200])
movegui(gcf,'center')
ax = gobjects(N.HGain,N.WGain);
vector = -70:3:70;
pp = 1;
for ww = 1:N.WGain
for hh = 1:N.HGain
ax(hh,ww) = subplot(N.HGain,N.WGain,pp); hold on
if any(pp==(1:N.WGain))
title(['Wing Gain = ' num2str(U.WGain{1}(ww))],'FontSize',12,'fontweight','bold')
end
if ((pp-1)/N.WGain) == floor((pp-1)/N.WGain)
ylabel(['Head Gain = ' num2str(U.HGain{1}(hh))],...
'FontSize',13,'fontweight','bold')
else
% yticklabels('')
end
if any(pp==(N.WGain*N.HGain-N.WGain+1):(N.WGain*N.HGain))
xlabel(['\Delta WBA(' char(176) ')'],'FontSize',12,'fontweight','bold')
else
% xticklabels('')
end
pos = rad2deg(WING.All.Pos{ww,hh});
histogram(pos,vector,'facecolor','k','Normalization','pdf');
pp = pp + 1;
end
end
set(ax,'XLim',80*[-1 1])
linkaxes(ax,'xy')
%% Histogram of HEAD Position ALL FLIES %%
fig(1) = figure (1) ; clf ; hold on
set(fig,'Color','w','Name','Histogram of Wing Position','Position',[0 0 N.WGain*300 N.HGain*200])
movegui(gcf,'center')
ax = gobjects(N.HGain,N.WGain);
vector = -20:1:20;
pp = 1;
for ww = 1:N.WGain
for hh = 1:N.HGain
ax(hh,ww) = subplot(N.HGain,N.WGain,pp); hold on
if any(pp==(1:N.WGain))
title(['Wing Gain = ' num2str(U.WGain{1}(ww))],'FontSize',12,'fontweight','bold')
end
if ((pp-1)/N.WGain) == floor((pp-1)/N.WGain)
ylabel(['Head Gain = ' num2str(U.HGain{1}(hh))],...
'FontSize',13,'fontweight','bold')
else
% yticklabels('')
end
if any(pp==(N.WGain*N.HGain-N.WGain+1):(N.WGain*N.HGain))
xlabel(['\Delta WBA(' char(176) ')'],'FontSize',12,'fontweight','bold')
else
% xticklabels('')
end
pos = rad2deg(HEAD.All.Pos{ww,hh});
histogram(pos,vector,'facecolor','k','Normalization','pdf');
pp = pp + 1;
end
end
set(ax,'XLim',20*[-1 1])
linkaxes(ax,'xy')
end