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00check.log
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* using log directory ‘/Users/patrick_bloniasz/PhasePlaneBasics/PhasePlaneBasics.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.5
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘PhasePlaneBasics/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PhasePlaneBasics’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Patrick F. Bloniasz <patrick.bloniasz@gmail.com>’
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘PhasePlaneBasics’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Files ‘README.md’ or ‘NEWS.md’ cannot be checked without ‘pandoc’ being installed.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
* checking PDF version of manual without index ... ERROR
Re-running with no redirection of stdout/stderr.
* checking HTML version of manual ... NOTE
Found the following HTML validation problems:
nullclines.html:15:44 (nullclines.Rd:5): Error: <main> is not recognized!
nullclines.html:15:44 (nullclines.Rd:5): Warning: discarding unexpected <main>
nullclines.html:98:1 (nullclines.Rd:50): Warning: discarding unexpected </main>
nullclines.html:4:1 (nullclines.Rd:5): Warning: <link> inserting "type" attribute
nullclines.html:12:1 (nullclines.Rd:5): Warning: <script> proprietary attribute "onload"
nullclines.html:12:1 (nullclines.Rd:5): Warning: <script> inserting "type" attribute
nullclines.html:17:1 (nullclines.Rd:5): Warning: <table> lacks "summary" attribute
nullclines.html:36:1 (nullclines.Rd:10): Warning: <table> lacks "summary" attribute
phasearrows.html:15:44 (phasearrows.Rd:5): Error: <main> is not recognized!
phasearrows.html:15:44 (phasearrows.Rd:5): Warning: discarding unexpected <main>
phasearrows.html:115:1 (phasearrows.Rd:63): Warning: discarding unexpected </main>
phasearrows.html:4:1 (phasearrows.Rd:5): Warning: <link> inserting "type" attribute
phasearrows.html:12:1 (phasearrows.Rd:5): Warning: <script> proprietary attribute "onload"
phasearrows.html:12:1 (phasearrows.Rd:5): Warning: <script> inserting "type" attribute
phasearrows.html:17:1 (phasearrows.Rd:5): Warning: <table> lacks "summary" attribute
phasearrows.html:45:1 (phasearrows.Rd:19): Warning: <table> lacks "summary" attribute
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
‘PhasePlaneBasics-manual.tex’
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 4 NOTEs