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source("hdi_lasso_proj_loocv_MSI.R") Loading required package: doParallel Loading required package: foreach Loading required package: iterators Loading required package: parallel [1] "Number of workers: 20" [1] "genes.list: /data/longyong/lasso/gene_list.txt" [1] "genes.table: /data/longyong/lasso/gene_small.txt" [1] "microbiome.table: /data/longyong/lasso/microbes.txt" [1] "output.dir: /data/longyong/lasso/output" [1] "# genes = 6541" [1] "# microbes = 213" Read 6541 items Error in estimate.sigma.fit.hdi(x, y, gene_list[i]) : task 1 failed - "zero-length inputs cannot be mixed with those of non-zero length" Timing stopped at: 5.558 1.596 3679
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