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tasks for bam2fq pipeline #338

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tasks for bam2fq pipeline #338

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@hexylena hexylena commented Apr 23, 2025 •
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Checklist

  • Pull request details were added to CHANGELOG.md.
  • Documentation was updated (if required).
  • parameter_meta was added/updated (if required).
  • Submodule branches are on develop or a tagged commit.

here i've

  • Added biopet task for validating fastq (it's a nice tool! Thanks for writing it.)
  • Updated the samtools.Fastq task based on discussion in chat, I need to be able to specify the singleton location in addition to 1/2

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