From 308d8b6929c9bc389614a792c69ed04c3e79a6d0 Mon Sep 17 00:00:00 2001
From: biosimulatorsdaemon
Date: Wed, 13 Jan 2021 21:30:52 +0000
Subject: [PATCH] Updating compiled documentation
---
docs/_static/documentation_options.js | 2 +-
docs/about.html | 2 +-
docs/genindex.html | 2 +-
docs/index.html | 2 +-
docs/installation.html | 2 +-
docs/py-modindex.html | 2 +-
docs/search.html | 2 +-
docs/searchindex.js | 2 +-
docs/source/biosimulators_tellurium.html | 8 +++++++-
docs/tutorial.html | 2 +-
10 files changed, 16 insertions(+), 10 deletions(-)
diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
index 48f83b2..fc58c50 100644
--- a/docs/_static/documentation_options.js
+++ b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
var DOCUMENTATION_OPTIONS = {
URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
- VERSION: '0.1.0',
+ VERSION: '0.1.1',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
diff --git a/docs/about.html b/docs/about.html
index ad70620..474c70c 100644
--- a/docs/about.html
+++ b/docs/about.html
@@ -5,7 +5,7 @@
- About BioSimulators-tellurium — BioSimulators-tellurium 0.1.0 documentation
+ About BioSimulators-tellurium — BioSimulators-tellurium 0.1.1 documentation
diff --git a/docs/genindex.html b/docs/genindex.html
index cab4baa..e17cc16 100644
--- a/docs/genindex.html
+++ b/docs/genindex.html
@@ -5,7 +5,7 @@
- Index — BioSimulators-tellurium 0.1.0 documentation
+ Index — BioSimulators-tellurium 0.1.1 documentation
diff --git a/docs/index.html b/docs/index.html
index 8b3a13b..c0a9b23 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -5,7 +5,7 @@
- BioSimulators-tellurium documentation — BioSimulators-tellurium 0.1.0 documentation
+ BioSimulators-tellurium documentation — BioSimulators-tellurium 0.1.1 documentation
diff --git a/docs/installation.html b/docs/installation.html
index 0a02075..a77254f 100644
--- a/docs/installation.html
+++ b/docs/installation.html
@@ -5,7 +5,7 @@
- Installation instructions — BioSimulators-tellurium 0.1.0 documentation
+ Installation instructions — BioSimulators-tellurium 0.1.1 documentation
diff --git a/docs/py-modindex.html b/docs/py-modindex.html
index e56833f..3527a5b 100644
--- a/docs/py-modindex.html
+++ b/docs/py-modindex.html
@@ -5,7 +5,7 @@
- Python Module Index — BioSimulators-tellurium 0.1.0 documentation
+ Python Module Index — BioSimulators-tellurium 0.1.1 documentation
diff --git a/docs/search.html b/docs/search.html
index d845cf5..503217e 100644
--- a/docs/search.html
+++ b/docs/search.html
@@ -5,7 +5,7 @@
- Search — BioSimulators-tellurium 0.1.0 documentation
+ Search — BioSimulators-tellurium 0.1.1 documentation
diff --git a/docs/searchindex.js b/docs/searchindex.js
index de2e428..f1f030e 100644
--- a/docs/searchindex.js
+++ b/docs/searchindex.js
@@ -1 +1 @@
-Search.setIndex({docnames:["about","genindex","index","installation","source/biosimulators_tellurium","tutorial"],envversion:{"sphinx.domains.c":2,"sphinx.domains.changeset":1,"sphinx.domains.citation":1,"sphinx.domains.cpp":3,"sphinx.domains.index":1,"sphinx.domains.javascript":2,"sphinx.domains.math":2,"sphinx.domains.python":2,"sphinx.domains.rst":2,"sphinx.domains.std":1,sphinx:56},filenames:["about.rst","genindex.rst","index.rst","installation.rst","source/biosimulators_tellurium.rst","tutorial.rst"],objects:{"":{biosimulators_tellurium:[4,0,0,"-"]},"biosimulators_tellurium.config":{Config:[4,1,1,""]},"biosimulators_tellurium.config.Config":{plotting_engine:[4,2,1,""]},"biosimulators_tellurium.core":{exec_sedml_docs_in_combine_archive:[4,3,1,""]},"biosimulators_tellurium.data_model":{PlottingEngine:[4,1,1,""]},"biosimulators_tellurium.data_model.PlottingEngine":{matplotlib:[4,2,1,""],plotly:[4,2,1,""]},biosimulators_tellurium:{config:[4,0,0,"-"],core:[4,0,0,"-"],data_model:[4,0,0,"-"]}},objnames:{"0":["py","module","Python module"],"1":["py","class","Python class"],"2":["py","attribute","Python attribute"],"3":["py","function","Python function"]},objtypes:{"0":"py:module","1":"py:class","2":"py:attribute","3":"py:function"},terms:{"2020":4,"2021":4,"class":4,"enum":4,"true":4,For:5,The:5,about:[2,5],abov:5,after:3,algorithm:[2,5],all:5,also:2,analogmachin:5,ani:0,apach:0,api:2,applic:[2,5],archiv:[2,4],archive_filenam:4,argument:5,author:4,avail:[2,3,5],base:4,below:5,bind:5,biolog:2,biomed:[0,4],biosimul:[3,5],biosimulators_tellurium:2,bool:4,bundl:4,bundle_output:4,can:5,center:[0,4],combin:[2,4],command:[0,2],comment:2,compliant:[2,5],config:2,configur:4,consol:5,contact:0,contain:5,copyright:4,core:2,could:5,creat:2,csv:4,data:4,data_model:2,date:4,debug:5,defin:4,describ:[2,5],develop:2,dir:5,directori:[4,5],docker:[0,2],edu:4,enabl:2,encapsul:[3,5],encod:2,engin:4,entrypoint:2,exampl:5,exec_sedml_docs_in_combine_arch:4,execut:[2,4,5],exit:5,experi:2,file:[4,5],follow:[3,5],format:[2,4],full:5,ghcr:[3,5],hdf5:4,help:5,how:5,http:5,icahn:0,illustr:5,imag:[0,2],index:2,individu:4,inform:5,instal:2,instruct:2,interfac:[2,5],jonathan:4,karr:[0,4],keep:4,keep_individual_output:4,kei:4,lab:0,latest:5,libxml2:3,licens:[2,4],line:[0,2],list:[2,4,5],matplotlib:4,medicin:0,messag:5,method:4,mit:[0,4],mode:5,model:[0,2,4,5],modul:2,more:[2,5],mount:[0,5],mssm:4,none:4,number:5,object:4,omex:[2,4],one:[2,5],option:[4,5],org:5,out:5,out_dir:[4,5],output:[4,5],packag:[0,2],paramet:[2,4,5],path:[4,5],pdf:4,pip:3,pleas:0,plot:4,plot_format:4,plotformat:4,plotli:4,plott:4,plotting_engin:4,plottingengin:4,program:[0,2],provid:2,pull:3,pwd:5,python:3,question:2,quiet:5,rel:4,releas:0,report:4,report_format:4,reportformat:4,reproduc:[0,4],result:5,run:[3,5],runbiosimul:2,same:5,sauro:0,save:[4,5],sbml:2,school:0,sed:[2,4],servic:2,show:5,simpl:2,simul:2,sinai:0,singl:4,sourc:[4,5],store:4,str:4,studi:5,submodul:2,support:[2,5],suppress:5,target:5,task:4,team:2,tellurium:[3,4,5],thi:[0,2,5],tmp:5,tool:2,tty:5,tutori:2,type:[4,5],under:0,univers:0,usag:5,use:[2,5],used:5,user:2,uses:4,using:[2,4],valu:4,version:5,washington:0,web:2,which:[4,5],within:4,work:[4,5]},titles:["About BioSimulators-tellurium","Index","BioSimulators-tellurium documentation","Installation instructions","biosimulators_tellurium package","Tutorial"],titleterms:{about:0,archiv:5,biosimul:[0,2],biosimulators_tellurium:4,combin:5,command:[3,5],comment:0,config:4,content:2,core:4,creat:5,data_model:4,develop:0,docker:[3,5],document:2,encod:5,entrypoint:[3,5],experi:5,imag:[3,5],index:1,instal:3,instruct:3,licens:0,line:[3,5],modul:4,omex:5,packag:4,program:[3,5],question:0,sed:5,simul:5,submodul:4,team:0,tellurium:[0,2],tutori:5}})
\ No newline at end of file
+Search.setIndex({docnames:["about","genindex","index","installation","source/biosimulators_tellurium","tutorial"],envversion:{"sphinx.domains.c":2,"sphinx.domains.changeset":1,"sphinx.domains.citation":1,"sphinx.domains.cpp":3,"sphinx.domains.index":1,"sphinx.domains.javascript":2,"sphinx.domains.math":2,"sphinx.domains.python":2,"sphinx.domains.rst":2,"sphinx.domains.std":1,sphinx:56},filenames:["about.rst","genindex.rst","index.rst","installation.rst","source/biosimulators_tellurium.rst","tutorial.rst"],objects:{"":{biosimulators_tellurium:[4,0,0,"-"]},"biosimulators_tellurium.config":{Config:[4,1,1,""]},"biosimulators_tellurium.config.Config":{plotting_engine:[4,2,1,""]},"biosimulators_tellurium.core":{exec_sedml_docs_in_combine_archive:[4,3,1,""]},"biosimulators_tellurium.data_model":{PlottingEngine:[4,1,1,""]},"biosimulators_tellurium.data_model.PlottingEngine":{matplotlib:[4,2,1,""],plotly:[4,2,1,""]},biosimulators_tellurium:{config:[4,0,0,"-"],core:[4,0,0,"-"],data_model:[4,0,0,"-"]}},objnames:{"0":["py","module","Python module"],"1":["py","class","Python class"],"2":["py","attribute","Python attribute"],"3":["py","function","Python function"]},objtypes:{"0":"py:module","1":"py:class","2":"py:attribute","3":"py:function"},terms:{"2020":4,"2021":4,"class":4,"enum":4,"return":4,"true":4,For:5,The:5,about:[2,5],abov:5,after:3,algorithm:[2,5],all:5,also:2,analogmachin:5,ani:0,apach:0,api:2,applic:[2,5],archiv:[2,4],archive_filenam:4,argument:5,author:4,avail:[2,3,5],base:4,below:5,bind:5,biolog:2,biomed:[0,4],biosimul:[3,5],biosimulators_tellurium:2,bool:4,bundl:4,bundle_output:4,can:5,center:[0,4],combin:[2,4],combinearchivelog:4,command:[0,2],comment:2,compliant:[2,5],config:2,configur:4,consol:5,contact:0,contain:5,copyright:4,core:2,could:5,creat:2,csv:4,data:4,data_model:2,date:4,debug:5,defin:4,describ:[2,5],develop:2,dir:5,directori:[4,5],docker:[0,2],edu:4,enabl:2,encapsul:[3,5],encod:2,engin:4,entrypoint:2,exampl:5,exec_sedml_docs_in_combine_arch:4,execut:[2,4,5],exit:5,experi:2,file:[4,5],follow:[3,5],format:[2,4],full:5,ghcr:[3,5],hdf5:4,help:5,how:5,http:5,icahn:0,illustr:5,imag:[0,2],index:2,individu:4,inform:5,instal:2,instruct:2,interfac:[2,5],jonathan:4,karr:[0,4],keep:4,keep_individual_output:4,kei:4,lab:0,latest:5,libxml2:3,licens:[2,4],line:[0,2],list:[2,4,5],log:4,matplotlib:4,medicin:0,messag:5,method:4,mit:[0,4],mode:5,model:[0,2,4,5],modul:2,more:[2,5],mount:[0,5],mssm:4,none:4,number:5,object:4,omex:[2,4],one:[2,5],option:[4,5],org:5,out:5,out_dir:[4,5],output:[4,5],packag:[0,2],paramet:[2,4,5],path:[4,5],pdf:4,pip:3,pleas:0,plot:4,plot_format:4,plotformat:4,plotli:4,plott:4,plotting_engin:4,plottingengin:4,program:[0,2],provid:2,pull:3,pwd:5,python:3,question:2,quiet:5,rel:4,releas:0,report:4,report_format:4,reportformat:4,reproduc:[0,4],result:5,run:[3,5],runbiosimul:2,same:5,sauro:0,save:[4,5],sbml:2,school:0,sed:[2,4],servic:2,show:5,simpl:2,simul:2,sinai:0,singl:4,sourc:[4,5],store:4,str:4,studi:5,submodul:2,support:[2,5],suppress:5,target:5,task:4,team:2,tellurium:[3,4,5],thi:[0,2,5],tmp:5,tool:2,tty:5,tutori:2,type:[4,5],under:0,univers:0,usag:5,use:[2,5],used:5,user:2,uses:4,using:[2,4],valu:4,version:5,washington:0,web:2,which:[4,5],within:4,work:[4,5]},titles:["About BioSimulators-tellurium","Index","BioSimulators-tellurium documentation","Installation instructions","biosimulators_tellurium package","Tutorial"],titleterms:{about:0,archiv:5,biosimul:[0,2],biosimulators_tellurium:4,combin:5,command:[3,5],comment:0,config:4,content:2,core:4,creat:5,data_model:4,develop:0,docker:[3,5],document:2,encod:5,entrypoint:[3,5],experi:5,imag:[3,5],index:1,instal:3,instruct:3,licens:0,line:[3,5],modul:4,omex:5,packag:4,program:[3,5],question:0,sed:5,simul:5,submodul:4,team:0,tellurium:[0,2],tutori:5}})
\ No newline at end of file
diff --git a/docs/source/biosimulators_tellurium.html b/docs/source/biosimulators_tellurium.html
index c8ab230..e25e34c 100644
--- a/docs/source/biosimulators_tellurium.html
+++ b/docs/source/biosimulators_tellurium.html
@@ -5,7 +5,7 @@
- biosimulators_tellurium package — BioSimulators-tellurium 0.1.0 documentation
+ biosimulators_tellurium package — BioSimulators-tellurium 0.1.1 documentation
@@ -187,6 +187,12 @@ Submodules
+Returns
+log
+
+Return type
+CombineArchiveLog
+
diff --git a/docs/tutorial.html b/docs/tutorial.html
index 50a62da..b41107a 100644
--- a/docs/tutorial.html
+++ b/docs/tutorial.html
@@ -5,7 +5,7 @@
- Tutorial — BioSimulators-tellurium 0.1.0 documentation
+ Tutorial — BioSimulators-tellurium 0.1.1 documentation