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| <!DOCTYPE html> | ||
| <html lang="" xml:lang=""> | ||
| <head> | ||
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| <meta charset="utf-8" /> | ||
| <meta http-equiv="X-UA-Compatible" content="IE=edge" /> | ||
| <title>Course Materials | Introductory Spatial ’Omics Analysis: Visium HD</title> | ||
| <meta name="description" content="CBW’s Bookdown Template for Workshops" /> | ||
| <meta name="generator" content="bookdown 0.42 and GitBook 2.6.7" /> | ||
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| <meta property="og:title" content="Course Materials | Introductory Spatial ’Omics Analysis: Visium HD" /> | ||
| <meta property="og:type" content="book" /> | ||
| <meta property="og:image" content="https://bioinformaticsdotca.github.io/ISO-V_2025/img/ISO_logo.jpg" /> | ||
| <meta property="og:description" content="CBW’s Bookdown Template for Workshops" /> | ||
| <meta name="github-repo" content="bioinformaticsdotca.github.io/ISO-V_2025" /> | ||
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| <meta name="twitter:card" content="summary" /> | ||
| <meta name="twitter:title" content="Course Materials | Introductory Spatial ’Omics Analysis: Visium HD" /> | ||
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| <meta name="twitter:description" content="CBW’s Bookdown Template for Workshops" /> | ||
| <meta name="twitter:image" content="https://bioinformaticsdotca.github.io/ISO-V_2025/img/ISO_logo.jpg" /> | ||
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| <meta name="author" content="Instructors: Shamini Ayyadhury, Amina Abow, Melanie Peralta, Savannah Kipatrick, Alyona Ivanova, Trevor Pugh" /> | ||
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| <link href="libs/anchor-sections-1.1.0/anchor-sections-hash.css" rel="stylesheet" /> | ||
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| <style type="text/css"> | ||
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| div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;} | ||
| </style> | ||
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| <link rel="stylesheet" href="style.css" type="text/css" /> | ||
| </head> | ||
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| <body> | ||
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| <nav role="navigation"> | ||
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| <ul class="summary"> | ||
| <a href="https://bioinformaticsdotca.github.io/"> | ||
| <img src="img/bioinformatics_logo.png" width="90%" alt="bioinformatics.ca logo" style="display:block; margin-left:auto; margin-right:auto; margin-top:15px;"> | ||
| </a> | ||
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| <li><a href="./">Introductory Spatial 'Omics Analysis: Visium HD</a></li> | ||
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| <li class="divider"></li> | ||
| <li class="part"><span><b>I Introduction</b></span></li> | ||
| <li class="chapter" data-level="" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i>Welcome</a></li> | ||
| <li class="chapter" data-level="" data-path="course-materials.html"><a href="course-materials.html"><i class="fa fa-check"></i>Course Materials</a> | ||
| <ul> | ||
| <li class="chapter" data-level="" data-path="course-materials.html"><a href="course-materials.html#course-schedule"><i class="fa fa-check"></i>Course Schedule</a></li> | ||
| <li class="chapter" data-level="" data-path="course-materials.html"><a href="course-materials.html#pre-workshop-materials"><i class="fa fa-check"></i>Pre-workshop Materials</a></li> | ||
| <li class="chapter" data-level="" data-path="course-materials.html"><a href="course-materials.html#meet-your-faculty"><i class="fa fa-check"></i>Meet Your Faculty</a></li> | ||
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| <li class="part"><span><b>II Modules</b></span></li> | ||
| <li class="chapter" data-level="" data-path="module-materials.html"><a href="module-materials.html"><i class="fa fa-check"></i>Module Materials</a></li> | ||
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| <h1 id="sponsors">Sponsors</h1> | ||
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| <img src="img/sponsors/Genome-Canada-Logo.svg" width=100%> | ||
| <img src="img/sponsors/OntarioGenomics_Logo.png" width=100%> | ||
| <img src="img/sponsors/HPC4Health_Logo.png" width=100%> | ||
| <img src="img/sponsors/BSCIlogo.png" width=100%> | ||
| <img src="img/sponsors/BrainCanadaLogo.png" width=100%> | ||
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| <li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li> | ||
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| <h1> | ||
| <i class="fa fa-circle-o-notch fa-spin"></i><a href="./">Introductory Spatial ’Omics Analysis: Visium HD</a> | ||
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| <div id="course-materials" class="section level1 hasAnchor"> | ||
| <h1>Course Materials<a href="course-materials.html#course-materials" class="anchor-section" aria-label="Anchor link to header"></a></h1> | ||
| <div id="course-schedule" class="section level2 hasAnchor"> | ||
| <h2>Course Schedule<a href="course-materials.html#course-schedule" class="anchor-section" aria-label="Anchor link to header"></a></h2> | ||
| <table> | ||
| <colgroup> | ||
| <col width="13%" /> | ||
| <col width="42%" /> | ||
| <col width="13%" /> | ||
| <col width="29%" /> | ||
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| <thead> | ||
| <tr class="header"> | ||
| <th align="center">Time (Eastern)</th> | ||
| <th align="center">Feb. 20</th> | ||
| <th align="center">Time (Eastern)</th> | ||
| <th align="center">Feb. 21</th> | ||
| </tr> | ||
| </thead> | ||
| <tbody> | ||
| <tr class="odd"> | ||
| <td align="center">8:30</td> | ||
| <td align="center">Arrivals & Check-in</td> | ||
| <td align="center">8:30</td> | ||
| <td align="center">Arrivals</td> | ||
| </tr> | ||
| <tr class="even"> | ||
| <td align="center">9:00</td> | ||
| <td align="center">Welcome (Nia Hughes)</td> | ||
| <td align="center">9:00</td> | ||
| <td align="center">Module 4 (Savannah Kilpatrick)</td> | ||
| </tr> | ||
| <tr class="odd"> | ||
| <td align="center">9:05</td> | ||
| <td align="center">Zhibin (Compute)</td> | ||
| <td align="center"></td> | ||
| <td align="center"></td> | ||
| </tr> | ||
| <tr class="even"> | ||
| <td align="center">9:15</td> | ||
| <td align="center">Opening Speech - Trevor Pugh (BSCI)</td> | ||
| <td align="center"></td> | ||
| <td align="center"></td> | ||
| </tr> | ||
| <tr class="odd"> | ||
| <td align="center">10:15</td> | ||
| <td align="center">Break (15min)</td> | ||
| <td align="center">11:00</td> | ||
| <td align="center">Break (15min)</td> | ||
| </tr> | ||
| <tr class="even"> | ||
| <td align="center">10:30</td> | ||
| <td align="center">Panorama of Spatial Biology (Shamini Ayyadhury)</td> | ||
| <td align="center">11:15</td> | ||
| <td align="center">Module 5 (Alyona Ivanova)</td> | ||
| </tr> | ||
| <tr class="odd"> | ||
| <td align="center">11:30</td> | ||
| <td align="center">Module 1 (Amina Abow)</td> | ||
| <td align="center"></td> | ||
| <td align="center"></td> | ||
| </tr> | ||
| <tr class="even"> | ||
| <td align="center">12:00</td> | ||
| <td align="center">Lunch (45min)</td> | ||
| <td align="center">13:15</td> | ||
| <td align="center">Class photo + Lunch (45min)</td> | ||
| </tr> | ||
| <tr class="odd"> | ||
| <td align="center">12:45</td> | ||
| <td align="center">Module 1 (Melanie Peralta)</td> | ||
| <td align="center">14:00</td> | ||
| <td align="center">Module 6 (Shamini Ayyadhury)</td> | ||
| </tr> | ||
| <tr class="even"> | ||
| <td align="center">13:15</td> | ||
| <td align="center">Module 2 (Savannah Kipatrick)</td> | ||
| <td align="center"></td> | ||
| <td align="center"></td> | ||
| </tr> | ||
| <tr class="odd"> | ||
| <td align="center">15:15</td> | ||
| <td align="center">Break (15min)</td> | ||
| <td align="center">16:00</td> | ||
| <td align="center">Closing Talk (Gary Bader)</td> | ||
| </tr> | ||
| <tr class="even"> | ||
| <td align="center">15:30</td> | ||
| <td align="center">Module 3 (Shamini Ayyadhury)</td> | ||
| <td align="center">16:30</td> | ||
| <td align="center">Survey & Closing Remarks</td> | ||
| </tr> | ||
| <tr class="odd"> | ||
| <td align="center">17:30</td> | ||
| <td align="center">Finished</td> | ||
| <td align="center">17:45</td> | ||
| <td align="center">Social + Networking</td> | ||
| </tr> | ||
| </tbody> | ||
| </table> | ||
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| </div> | ||
| <div id="pre-workshop-materials" class="section level2 hasAnchor"> | ||
| <h2>Pre-workshop Materials<a href="course-materials.html#pre-workshop-materials" class="anchor-section" aria-label="Anchor link to header"></a></h2> | ||
| <p><a href="https://docs.google.com/forms/d/e/1FAIpQLSeT3dlar3GpewcRe4Yjn5_Do0mR37brQ9eKeWmi2904_Q1AEw/viewform?usp=sf_link">You can find the pre-work here.</a></p> | ||
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| </div> | ||
| <div id="meet-your-faculty" class="section level2 hasAnchor"> | ||
| <h2>Meet Your Faculty<a href="course-materials.html#meet-your-faculty" class="anchor-section" aria-label="Anchor link to header"></a></h2> | ||
| <p>Coming soon!</p> | ||
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| </div> | ||
| </div> | ||
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| </section> | ||
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| </div> | ||
| </div> | ||
| </div> | ||
| <a href="index.html" class="navigation navigation-prev " aria-label="Previous page"><i class="fa fa-angle-left"></i></a> | ||
| <a href="module-materials.html" class="navigation navigation-next " aria-label="Next page"><i class="fa fa-angle-right"></i></a> | ||
| </div> | ||
| </div> | ||
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| Original file line number | Diff line number | Diff line change |
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| welcome | ||
| course-schedule | ||
| pre-workshop-materials | ||
| meet-your-faculty | ||
| module-materials | ||
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