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resources.html
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<!DOCTYPE html>
<html data-bs-theme="light" lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0, shrink-to-fit=no">
<title>MCC website</title>
<link rel="stylesheet" href="assets/bootstrap/css/bootstrap.min.css">
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Cookie">
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<link rel="stylesheet" href="assets/css/Masonry-gallery-cards-responsive.css">
<link rel="stylesheet" href="assets/css/styles.css">
<link rel="stylesheet" href="assets/css/tablaresponsive.css">
</head>
<body>
<nav class="navbar navbar-expand-lg fixed-top navbar-light">
<div class="container"><img id="logo" src="assets/img/MCC%20new%20logo%20v2.svg" style="margin-right: 10px;"><a class="navbar-brand d-none d-sm-none d-md-block d-lg-none d-xl-block d-xxl-block" href="#">Marmoset Coordinating Center</a><button data-bs-toggle="collapse" class="navbar-toggler" data-bs-target="#navcol-2"><span class="visually-hidden">Toggle navigation</span><span class="navbar-toggler-icon"></span></button>
<div class="collapse navbar-collapse" id="navcol-2">
<ul class="navbar-nav ms-auto">
<li class="nav-item"><a class="nav-link active" href="index.html">home</a></li>
<li class="nav-item dropdown"><a class="dropdown-toggle nav-link" aria-expanded="false" data-bs-toggle="dropdown" href="index.html#mission">about </a>
<div class="dropdown-menu"><a class="dropdown-item" href="index.html#mission">mission</a><a class="dropdown-item" href="index.html#who-we-are">who we are</a><a class="dropdown-item" href="index.html#funding">funding</a></div>
</li>
<li class="nav-item dropdown"><a class="dropdown-toggle nav-link" aria-expanded="false" data-bs-toggle="dropdown" href="learn.html">learn </a>
<div class="dropdown-menu"><a class="dropdown-item" href="learn.html">what is a marmoset</a><a class="dropdown-item" href="learn.html#advantages">advantages of marmosets in neuroscience</a><a class="dropdown-item" href="learn.html#research-techniques">research techniques in marmosets</a><a class="dropdown-item" href="learn.html#disease-models">marmoset disease models</a></div>
</li>
<li class="nav-item"><a class="nav-link" href="resources.html">resources</a></li>
<li class="nav-item dropdown"><a class="dropdown-toggle nav-link" aria-expanded="false" data-bs-toggle="dropdown" href="become-a-user.html" target="_parent">become a user</a>
<div class="dropdown-menu"><a class="dropdown-item" href="become-a-user.html">request access</a><a class="dropdown-item" href="become-a-user.html#request-animals">request animals</a><a class="dropdown-item" href="become-a-user.html#contribute-to-mcc">contribute animals/data</a></div>
</li>
</ul><span class="navbar-text actions"> <a class="btn btn-light" role="button" id="login-button" href="https://mcc.ohsu.edu/login-login.view" target="_blank">LOGIN</a></span>
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</nav>
<section class="d-xxl-flex align-items-xxl-center dark px-sm-1 px-1" id="resources-intro" style="height: auto;padding-top: 150px;/*padding-right: 4px;*/padding-bottom: 100px;/*padding-left: 4px;*/">
<div class="container">
<div class="row" style="margin-top: 0px;margin-bottom: 50px;">
<div class="col-12 col-lg-6 col-xl-6 col-xxl-6">
<h1 style="margin-top: 0px;">Resources</h1>
<p>The MCC aims provide information and support for investigators who are interested in using marmosets in their research. To this end, we have gathered to the most relevant and high-quality resources in one place. These include curated resources from NHP and/or marmoset consortia and primate centers, data tools and more. </p>
</div>
</div>
<div class="row">
<div class="col"><a class="btn btn-primary" role="button" href="#curated_resources" style="background: rgba(0,0,0,0.15);">Curated resources</a><a class="btn btn-primary" role="button" href="#tools" style="background: rgba(0,0,0,0.15);">Data tools</a><a class="btn btn-primary" role="button" href="#other_resources" style="background: rgba(0,0,0,0.15);">Other</a></div>
</div>
</div>
</section>
<section id="curated_resources" class="light px-sm-1 px-1">
<div class="container">
<div class="row">
<div class="col-lg-12">
<h1 style="padding: 0px;padding-top: 0px;margin-top: 0px;">curated marmoset and NHP resources </h1>
<div class="card" id="card_mwg" style="padding-bottom: 0px;margin-bottom: 20px;background: var(--bs-card-bg);">
<div class="card-body" style="background: rgba(25,135,84,0.1);">
<h4 class="card-title" style="color: var(--bs-gray-900);">MARMOSET WORKING GROUP (MWG)</h4>
<p class="card-text text-muted">The MWG works to strengthen communications, leverage system-wide resources, and facilitate sharing of information and best practices across US institutions housing common marmosets. The full group meets on the first Friday of the month at 2:00 PM Eastern. </p>
<p class="card-text text-muted">To request access to this forum, please fill out the form by clicking on the link below.</p><a href="https://www.surveymonkey.com/r/MWG-membership-application" target="_blank">Register</a>
</div>
</div>
<div class="card" id="card_pin" style="margin-bottom: 20px;">
<div class="card-body">
<h4 class="card-title" style="color: var(--bs-gray-900);"><span style="color: var(--bs-gray-900);">PRIMATE INFO NET (PIN)</span></h4>
<p class="card-text text-muted">The PIN provides valuable resources about NHPs - including marmosets - in research, education and conservation. It is curated by the Wisconsin National Primate Research Center, but is comprised on thousands of individuals working with NHPs.</p><a href="https://primate.wisc.edu/primate-info-net/" target="_blank">Visit site</a>
</div>
</div>
<div class="card" id="card_marmohub" style="margin-bottom: 20px;">
<div class="card-body" style="background: rgba(25,135,84,0.1);">
<h4 class="card-title" style="color: var(--bs-gray-900);"><span style="color: var(--bs-gray-900);">MARMOHUB.ORG</span></h4>
<p class="card-text text-muted">MarmoHub.org arose out of a community consortium for supporting the use of marmosets in biomedical research. The page provides information on relevant meetings, whitepapers and other resources.</p><a href="https://www.marmohub.org/" target="_blank">Visit site</a>
</div>
</div>
<div class="card" id="card_nwm" style="margin-bottom: 20px;">
<div class="card-body">
<h4 class="card-title" style="color: var(--bs-gray-900);"><span style="color: var(--bs-gray-900);">NWM IMMUNOREAGENT RESOURCE</span></h4>
<p class="card-text text-muted"><span style="color: rgb(70, 70, 70);">The goal of the New World Monkey (NWM) Immunoreagent Resource is to improve the translational value of NWM biomedical models by developing monoclonal antibodies (mAbs) that can be used in immunological assays for the identification and quantification of biomarkers of inflammation and metabolism in marmosets, owl monkeys and squirrel monkeys. </span></p>
<p class="card-text text-muted"><span style="color: rgb(70, 70, 70);">To request reagents, register by clicking the link below.</span></p><a href="https://www.trinity.edu/sites/nwmimmunoreagents" target="_blank">Visit site</a>
</div>
</div>
</div>
</div>
</div>
</section>
<section id="tools" class="dark px-sm-1 px-1">
<div class="container">
<div class="row">
<div class="col">
<h1 style="margin-top: 0px;">data tools for marmoset neuroscience research</h1>
</div>
</div>
<div id="tools-cards">
<div class="row" data-masonry="{"percentPosition": true }">
<div id="card_mcc_portal" class="col-sm-6 col-lg-4 mb-4" style="padding-top: 0px;padding-bottom: 12px;margin: 0px;">
<div class="card">
<picture type="" srcset=""><img class="card-img-top" src="assets/img/MCC%20web%20portal.png" alt="" style="border-radius: 0px;object-fit: cover;"></picture>
<hr>
<div class="card-body">
<p class="card-text text-muted">The MCC has demographic and genetics data on colonies and animals captured in the MCC database. This includes animal records, detailed pedigrees, genetic diversity, kinship and variant information. MCC account holders can access these data via the secure MCC portal. Individuals who do not already have an account can request access by clicking the link below.</p><a href="https://mcc.ohsu.edu/login-login.view" target="_blank">Login or request access</a>
<p><a href="/assets/pdf/MCC_Info_For_Users.pdf" target="_blank">Download the user guide</a></p>
</div>
</div>
</div>
<div id="card_sra" class="col-sm-6 col-lg-4 mb-4" style="padding-bottom: 12px;margin: 0px;">
<div class="card">
<picture type="" srcset=""><img class="card-img-top" src="assets/img/NIH%20SRA.png" alt="" style="border-radius: 0px;object-fit: cover;"></picture>
<hr>
<div class="card-body">
<p class="card-text text-muted">Raw sequence data generated by the MCC has been deposited in the NIH SRA in an effort to increase accessibility to this rich resource. MCC account holders can access these data directly from the MCC web portal. </p><a href="https://www.ncbi.nlm.nih.gov/sra?term=SRP485416" target="_blank">Visit site</a>
</div>
</div>
</div>
<div id="card_brain_connectivity" class="col-sm-6 col-lg-4 mb-4" style="padding-bottom: 12px;margin: 0px;">
<div class="card">
<picture type="" srcset=""><img class="card-img-top p-3" src="assets/img/marmoset_header.png" alt="" style="border-radius: 24px; object-fit: cover"></picture>
<hr>
<div class="card-body">
<p class="card-text text-muted">The marmoset brain connectivity atlas's immediate aim is to create a systematic, publicly available digital repository for data on the connections between different cortical areas, in a primate species.<br></p><a href="https://www.marmosetbrain.org/" target="_blank">Visit site</a>
</div>
</div>
</div>
<div id="card_minds" class="col-sm-6 col-lg-4 mb-4" style="padding-bottom: 12px;margin: 0px;">
<div class="card">
<picture type="" srcset=""><img class="card-img-top p-3" src="assets/img/logo_brainminds_dataportal.png" alt="" style="border-radius: 24px; object-fit: cover"></picture>
<hr>
<div class="card-body">
<p class="card-text text-muted">Brain/MINDS is a national project started by Japan in 2014 that aims to develop novel, cutting-edge technologies that support brain mapping, with a special focus on building a multiscale structural and functional marmoset brain map.<br></p><a href="https://dataportal.brainminds.jp/atlas-package-download-main-page" target="_blank">Visit site</a>
</div>
</div>
</div>
<div id="card_gene_atlas" class="col-sm-6 col-lg-4 mb-4" style="padding-bottom: 12px;margin: 0px;">
<div class="card">
<picture type="" srcset=""><img class="card-img-top p-3" src="assets/img/gene%20atals.png" alt="" style="border-radius: 24px; object-fit: cover"></picture>
<hr>
<div class="card-body">
<p class="card-text text-muted">The marmoset gene atlas's aim is to establish a genome-wide, high-resolution atlas of gene expression throughout the common marmoset brain using in situ hybridization analysis.<br></p><a href="https://gene-atlas.brainminds.riken.jp/" target="_blank">Visit site</a>
</div>
</div>
</div>
<div id="card_brain_mapping" class="col-sm-6 col-lg-4 mb-4" style="padding-bottom: 12px;margin: 0px;">
<div class="card">
<picture type="" srcset=""><img class="card-img-top p-3" src="assets/img/marmoset%20brain%20mapping%20logo.png" alt="" style="border-radius: 24px; object-fit: cover"></picture>
<hr>
<div class="card-body">
<p class="card-text text-muted">The Marmoset Brain Mapping Project was launched in 2016 to build comprehensive brain atlases and tools to facilitate neuroimaging and translational studies.<br></p><a href="https://marmosetbrainmapping.org/" target="_blank">Visit site</a>
</div>
</div>
</div>
<div id="card_genome_project" class="col-sm-6 col-lg-4 mb-4" style="padding-bottom: 12px;margin: 0px;height: auto;padding-top: 0px;padding-right: 12px;padding-left: 12px;">
<div class="card">
<picture type="" srcset=""><img id="card5" class="card-img-top" src="assets/img/marmoset%20genome%20project.jpg" alt="" style="border-radius: 0px;object-fit: cover;"></picture>
<hr>
<div class="card-body">
<p class="card-text text-muted">The Marmoset Genome Sequencing Consortium is a collaboration between the Baylor College of Medicine Human Genome Sequencing Center and the Genome Institute at Washington University (St. Louis, MO). A female marmoset selected from SNPRC serves as the reference animal and other individuals have also been sequenced to provide information about with-in species genetic variation.</p><a href="https://www.ncbi.nlm.nih.gov/data-hub/taxonomy/9483/" target="_blank">Visit site</a>
</div>
</div>
</div>
<div id="card_brain_connectome" class="col-sm-6 col-lg-4 mb-4" style="padding-bottom: 12px;margin: 0px;">
<div class="card">
<picture type="" srcset=""><img id="card6" class="card-img-top" src="assets/img/mbc_header.png" alt="" style="border-radius: 0px;object-fit: cover;"></picture>
<hr>
<div class="card-body">
<p class="card-text text-muted">The Marmoset Brain Connectome is an open access resource that allows for online viewing and download of MRI data in fully awake marmosets. Using the website portal, users can instantaneously view, manipulate, and download any whole-brain functional connectivity topology along with the raw datasets and preprocessing code.</p><a href="https://www.marmosetbrainconnectome.org/" target="_blank">Visit site</a>
</div>
</div>
</div>
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</div>
</div>
</section>
<section id="other_resources" class="light px-sm-1 px-1">
<div class="container">
<div class="row">
<div class="col">
<h1>other marmoset resources</h1>
<div class="accordion" role="tablist" id="accordion-1">
<div class="accordion-item" id="resources-whitepapers">
<h2 class="accordion-header" role="tab"><button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#accordion-1 .item-1" aria-expanded="true" aria-controls="accordion-1 .item-1">Whitepapers</button></h2>
<div class="accordion-collapse collapse show item-1" role="tabpanel" data-bs-parent="#accordion-1">
<div class="accordion-body">
<p class="mb-0"><a href="/assets/pdf/2023_marmoset_white_paper.pdf" target="_blank">NIH 2023 Marmoset Community White Paper</a><i class="far fa-file-pdf"></i></p>
<p class="mb-0"><a href="/assets/pdf/2021_marmoset_white_paper.pdf" target="_blank">NIH 2021 Marmoset Community White Paper</a><i class="far fa-file-pdf"></i></p>
<p class="mb-0"><a href="/assets/pdf/2019_marmoset_white_paper.pdf" target="_blank">NIH 2019 Marmoset Community White Paper</a><i class="far fa-file-pdf"></i></p>
</div>
</div>
</div>
<div class="accordion-item" id="resources-protocols">
<h2 class="accordion-header" role="tab"><button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#accordion-1 .item-2" aria-expanded="false" aria-controls="accordion-1 .item-2">Protocols</button></h2>
<div class="accordion-collapse collapse item-2" role="tabpanel" data-bs-parent="#accordion-1">
<div class="accordion-body">
<p class="mb-0">Please check back soon for downloadable protocols</p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</section>
<footer>
<div class="container" id="footer">
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<p>Contact us at mcc@ohsu.edu</p>
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<p>© 2024 Marmoset Coordinating Center</p>
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