NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(RunUMAP,Matrix)
export(AddClonesToPlot)
export(AliasGeneNames)
export(AvgCellExprs)
export(CalculateModuleScoreAvg)
export(ClassifySGS)
export(ClassifySGSAndApply)
export(ClassifySGS_Multiple)
export(ColorTheme)
export(CreateSeuratObj)
export(DimPlot_SingleRClassLabs)
export(FilterCloneNames)
export(FindClustersAndDimRedux)
export(Find_Markers)
export(Garnett_Classification)
export(GetEnsmbleVarImportance)
export(GetGeneIds)
export(GetTraingStats)
export(GetXYDataFromPlot)
export(MergeSeuratObjs)
export(MultiClassifier_Cells)
export(Phenotyping_GeneList)
export(PlotAvgExpr)
export(PlotBin2D)
export(PlotDiffComp)
export(PlotDiffComp2)
export(PlotExprThrTab)
export(PlotFeatThrTab)
export(PlotHistDensOptima)
export(PlotImmuneMarkers)
export(PlotMyTable)
export(ProcessSeurat1)
export(QueryEnsemblSymbolAndHumanHomologs)
export(ReadAndFilter10xData)
export(RecomposeSDAmatrix)
export(RecreateSeuratObjFromSDAmatrix)
export(RunSingleR)
export(SaveDimRedux)
export(Ser2Monicle_MakeNProcess)
export(Tabulate_SingleRClassLabs)
export(TranslateGeneNames)
export(TranslateToDAVID)
export(TranslateToEnsembl)
export(TranslateToStringDb)
export(WriteCellBarcodes)
export(WriteSummaryMetrics)
export(bimodal_posDisHD)
export(bimodal_posDist1D)
export(is.even)
export(is.odd)
import(DESeq2)
import(MAST)
import(RColorBrewer)
import(RDAVIDWebService, except = c('counts', 'cluster'))
import(Rlabkey)
import(STRINGdb)
import(Seurat)
import(SingleR)
import(caret)
import(data.table)
import(garnett)
import(ggplot2)
import(glmnet)
import(monocle)
import(org.Hs.eg.db)
import(patchwork)
import(ranger)
import(rpart)
import(rpart.plot)
importFrom(BiocGenerics,order)
importFrom(DropletUtils,barcodeRanks)
importFrom(DropletUtils,emptyDrops)
importFrom(Hmisc,cut2)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Seurat,Read10X)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useEnsembl)
importFrom(caret,confusionMatrix)
importFrom(caret,trainControl)
importFrom(caret,twoClassSummary)
importFrom(cowplot,plot_grid)
importFrom(dplyr,"%>%")
importFrom(dplyr,coalesce)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,top_n)
importFrom(fastAdaboost,adaboost)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,colors)
importFrom(grDevices,hcl)
importFrom(grDevices,recordPlot)
importFrom(graphics,abline)
importFrom(graphics,boxplot)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,segments)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(rpart.plot,prp)
importFrom(scater,logNormCounts)
importFrom(stats,approxfun)
importFrom(stats,cmdscale)
importFrom(stats,coef)
importFrom(stats,dist)
importFrom(stats,kmeans)
importFrom(stats,lm)
importFrom(stats,na.omit)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,wilcox.test)
importFrom(stringr,str_match)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.csv)
importFrom(utils,write.table)