diff --git a/scripts/downloadMedGenomeScript.sh b/scripts/downloadMedGenomeScript.sh index f1c5190..386479c 100644 --- a/scripts/downloadMedGenomeScript.sh +++ b/scripts/downloadMedGenomeScript.sh @@ -27,7 +27,7 @@ fi cd $DIRNAME HOST=portal-us.medgenome.com -wget -nv -r -c --no-check-certificate --user= --password=${PW} --cut-dirs=1 --reject "index.html*" --reject-regex="_I1_|_I2_|Undetermined_" https://${HOST}/${USER}/FASTQ +wget -nv -r -c --no-check-certificate --user=${DIRNAME} --password=${PW} --cut-dirs=1 --reject "index.html*" --reject-regex="_I1_|_I2_|Undetermined_" https://${HOST}/${DIRNAME}/FASTQ touch download.${DIRNAME}.done find . -name '*.gz' -exec mv {} ./ \; diff --git a/servers/mgap/mgapSettings.sh b/servers/mgap/mgapSettings.sh index 505eefd..c9988aa 100644 --- a/servers/mgap/mgapSettings.sh +++ b/servers/mgap/mgapSettings.sh @@ -5,7 +5,7 @@ set -e #mGAP: MAJOR=24 -MINOR_FULL="11" +MINOR_FULL="7" MINOR_SHORT=$MINOR_FULL LABKEY_HOME=/usr/local/labkey